RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PIGZQ86VD9 579 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 LRRTM3Q86VH5 581 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 CREG2Q8IUH2 290 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 C7orf61Q8IZ16 206 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 CEP112Q8N8E3 955 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 ZMIZ2Q8NF64 920 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 MYRIPQ8NFW9 859 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 PHOSPHO2Q8TCD6 241 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 SP7Q8TDD2 431 aaPredicted RBP15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 PIK3R5Q8WYR1 880 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 ZNF558Q96NG5 402 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 MCEEQ96PE7 176 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 SLC9A7Q96T83 725 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 SMOQ99835 787 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 CHST7Q9NS84 486 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 ASNSD1Q9NWL6 643 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 TTC7AQ9ULT0 858 aaPredicted RBP15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 BACE2Q9Y5Z0 518 aa15.71■□□□□ 0.11
CCDC88C-202ENST00000334448 C2CD4BA6NLJ0 364 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 HHLA1C9JL84 531 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 CLDN5O00501 218 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 SART1O43290 800 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 PSTPIP1O43586 416 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 AP1G2O75843 785 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 FBXO21O94952 628 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 SLU7O95391 586 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 GLI1P08151 1106 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 RFC1P35251 1148 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 PPM1AP35813 382 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 MAGEA11P43364 429 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 EPHB4P54760 987 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 SLC6A3Q01959 620 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 CKAP4Q07065 602 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 ADCY1Q08828 1119 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 BTG3Q14201 252 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 RASIP1Q5U651 963 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 VSTM1Q6UX27 236 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 OTOP2Q7RTS6 562 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 RASGEF1CQ8N431 466 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 UBL4BQ8N7F7 174 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 KHSRPQ92945 711 aaKnown RBP eCLIP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 RPGRIP1Q96KN7 1286 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 MED10Q9BTT4 135 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 TTPALQ9BTX7 342 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 HERC2P3Q9BVR0 1158 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 VN1R3Q9BXE9 311 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 DMAP1Q9NPF5 467 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 ST7Q9NRC1 585 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 TMLHEQ9NVH6 421 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 PCDHA3Q9Y5H8 950 aa15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 MRPL42Q9Y6G3 142 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 COL4A4P53420 1690 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-202ENST00000334448 FAM170AA1A519 330 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 SPOPO43791 374 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 LINC00271P0C7V0 271 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 RGS7P49802 495 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 ZNF143P52747 638 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 TUBB4BP68371 445 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 OGDHQ02218 1023 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 USP41Q3LFD5 358 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 CTXN3Q4LDR2 81 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 RTP2Q5QGT7 225 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 FAM102AQ5T9C2 384 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 SLC8B1Q6J4K2 584 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 COLGALT1Q8NBJ5 622 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 MNS1Q8NEH6 495 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 JOSD2Q8TAC2 188 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 ACTRT1Q8TDG2 376 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 COG1Q8WTW3 980 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 C2orf15Q8WU43 125 aaKnown RBP15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 CLP1Q92989 425 aaKnown RBP15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 BTBD6Q96KE9 485 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 TMEM209Q96SK2 561 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 YME1L1Q96TA2 773 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 NCAPGQ9BPX3 1015 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.69■□□□□ 0.13e-6■■■■■ 30.2
CCDC88C-202ENST00000334448 CNPY3Q9BT09 278 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 CNGB3Q9NQW8 809 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 METTL5Q9NRN9 209 aaKnown RBP15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 TMEM30AQ9NV96 361 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 MTRRQ9UBK8 725 aa15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 PACSIN2Q9UNF0 486 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-202ENST00000334448 GOLGA8SH3BPF8 625 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 CTIFO43310 598 aaKnown RBP15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 BEST1O76090 585 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 GJB6O95452 261 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 SOD2P04179 222 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 PCK1P35558 622 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 PBX3P40426 434 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 CACNA2D1P54289 1103 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 GPR17Q13304 367 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 CLUL1Q15846 466 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 EFHC1Q5JVL4 640 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 OR6B2Q6IFH4 312 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 BEND5Q7L4P6 421 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 POLNQ7Z5Q5 900 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 PHLDB2Q86SQ0 1253 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 IRGQQ8WZA9 623 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 ALG3Q92685 438 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 PIWIL1Q96J94 861 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms