RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 MICAL2O94851 1124 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 CALCAP01258 141 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 CDC25CP30307 473 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 ZNF132P52740 706 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 USP46P62068 366 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 CYP4F8P98187 520 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 SYCP1Q15431 976 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 GOLGA7BQ2TAP0 167 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 KLHDC7AQ5VTJ3 777 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 DPY19L2P1Q6NXN4 242 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 CLEC20AQ6ZU45 233 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 ZMIZ2Q8NF64 920 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 TRMT2BQ96GJ1 504 aaKnown RBP16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 PCMTD1Q96MG8 357 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 SLITRK6Q9H5Y7 841 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 CSNK1G1Q9HCP0 422 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 GDE1Q9NZC3 331 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 UXTQ9UBK9 157 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 LIMD1Q9UGP4 676 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 FHOD1Q9Y613 1164 aa16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 ZFP37Q9Y6Q3 630 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-201ENST00000332797 NPR3P17342 541 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 BRD2P25440 801 aaKnown RBP16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 RAPGEF1Q13905 1077 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 STXBP5Q5T5C0 1151 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 RNF135Q8IUD6 432 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 NUP93Q8N1F7 819 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 ST13P5Q8NFI4 369 aaPredicted RBP16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 TFAP2BQ92481 460 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 SHC3Q92529 594 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 MYRFLQ96LU7 910 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 DUSP16Q9BY84 665 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 PLCB1Q9NQ66 1216 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 FAM207AQ9NSI2 230 aaPredicted RBP16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 EHD2Q9NZN4 543 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 TSPAN16Q9UKR8 245 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 KIAA1257Q9ULG3 409 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 CNTN6Q9UQ52 1028 aa16.82■□□□□ 0.28
CCDC28A-201ENST00000332797 SERPINC1P01008 464 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 F11P03951 625 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 ASGR2P07307 311 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 UCHL3P15374 230 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 RFX1P22670 979 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 SLC5A3P53794 718 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 FILIP1LQ4L180 1135 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 ARHGAP15Q53QZ3 475 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 GPR158Q5T848 1215 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 POTEHQ6S545 545 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 TMEM150AQ86TG1 271 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 TTLL2Q9BWV7 592 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 HESX1Q9UBX0 185 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 SIK3Q9Y2K2 1263 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 DOCK8Q8NF50 2099 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 GREB1Q4ZG55 1949 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 MYH10P35580 1976 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 PATJQ8NI35 1801 aa16.81■□□□□ 0.28
CCDC28A-201ENST00000332797 O00370 1275 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 TNFRSF10BO14763 440 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 TEX33O43247 280 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 TADA3O75528 432 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 RTN3O95197 1032 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 PNMA6AP0CW24 399 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 BCAT1P54687 386 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 SLC8A3P57103 927 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 GPRIN1Q7Z2K8 1008 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 TTC30AQ86WT1 665 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 ANKRD52Q8NB46 1076 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 SCAMP5Q8TAC9 235 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 MRPS31Q92665 395 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 ZSWIM3Q96MP5 696 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 ZSWIM1Q9BR11 485 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 GANQ9H2C0 597 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 RTN4Q9NQC3 1192 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 BDP1A6H8Y1 2624 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 YWHAQP27348 245 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 GNA15P30679 374 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 HTR4Q13639 388 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 DRAP1Q14919 205 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 STILQ15468 1287 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 FAM78AQ5JUQ0 283 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 PARM1Q6UWI2 310 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 LCLAT1Q6UWP7 414 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 NEK11Q8NG66 645 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 UBA3Q8TBC4 463 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 ZSCAN18Q8TBC5 510 aaPredicted RBP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 RSAD2Q8WXG1 361 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 FBXO32Q969P5 355 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 ERGIC2Q96RQ1 377 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 NAA15Q9BXJ9 866 aaKnown RBP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 GPR88Q9GZN0 384 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 PNPLA8Q9NP80 782 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 ACP6Q9NPH0 428 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 MUTYHQ9UIF7 546 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 NUMBLQ9Y6R0 609 aa16.8■□□□□ 0.28
CCDC28A-201ENST00000332797 OBSL1O75147 1896 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 HHLA1C9JL84 531 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 M0QYV0 167 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 TNFRSF10AO00220 468 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 FOXN3O00409 490 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms