RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 AGTP01019 485 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 IFNA8P32881 189 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 PKN3Q6P5Z2 889 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 SLC13A5Q86YT5 568 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 SLC4A9Q96Q91 983 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 CGRRF1Q99675 332 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 C17orf75Q9HAS0 396 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 DDX43Q9NXZ2 648 aaKnown RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 PAIP2BQ9ULR5 123 aaKnown RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 RASSF10A6NK89 507 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 AP5Z1O43299 807 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 CCDC22O60826 627 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 TGM2P21980 687 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 NME5P56597 212 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 KCTD19Q17RG1 926 aaPredicted RBP10.57□□□□□ -0.72
CHD3-201ENST00000330494 TFAP2DQ7Z6R9 452 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 PPIL6Q8IXY8 311 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 ATP6V0D2Q8N8Y2 350 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 PNKPQ96T60 521 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 THTPAQ9BU02 230 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 CKMP06732 381 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 VGLL4Q14135 290 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 SLFN11Q7Z7L1 901 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 RAB42Q8N4Z0 105 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 SCUBE2Q9NQ36 999 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 HPSEQ9Y251 543 aa10.57□□□□□ -0.72
CHD3-201ENST00000330494 F8VZ95 297 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SLITRK3O94933 977 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 COL3A1P02461 1466 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 FBXW10Q5XX13 1052 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 COPS5Q92905 334 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 TMEM176AQ96HP8 235 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 CELF6Q96J87 481 aaKnown RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 CCT8L2Q96SF2 557 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 WWP1Q9H0M0 922 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 KLC4Q9NSK0 619 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 PNMA8BQ9ULN7 279 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 TSC22D4Q9Y3Q8 395 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SPATA31D1Q6ZQQ2 1576 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SLIT1O75093 1534 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 TBKBP1A7MCY6 615 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 P4HA2O15460 535 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 MZF1P28698 734 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 GCLCP48506 637 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 CYTH1Q15438 398 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 METTL7BQ6UX53 244 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 ZSWIM1Q9BR11 485 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 CYP4F12Q9HCS2 524 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.56□□□□□ -0.72
CHD3-201ENST00000330494 SLC12A8A0AV02 714 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 DCDC2CA8MYV0 355 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 CYTH3O43739 400 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 GAS2O43903 313 aaKnown RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 CDH16O75309 829 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 CCDC130P13994 396 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 HSD17B3P37058 310 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 OTUD4Q01804 1114 aaKnown RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 HIC1Q14526 733 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 GJC2Q5T442 439 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 OTOP1Q7RTM1 612 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 KCNB2Q92953 911 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 PPP2R3CQ969Q6 453 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 KDM4CQ9H3R0 1056 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SLC25A13Q9UJS0 675 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 LOC100653049A0A140TA62 436 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 MYO1GB0I1T2 1018 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 F5H5T6 163 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 KRT34O76011 436 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SOAT1P35610 550 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 DAB2P98082 770 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 ST3GAL1Q11201 340 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SHROOM1Q2M3G4 852 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 ARHGAP15Q53QZ3 475 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 TFDP3Q5H9I0 405 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 C11orf63Q6NUN7 778 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 RXFP2Q8WXD0 754 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 CRLS1Q9UJA2 301 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 PJA2O43164 708 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 VDRP11473 427 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 MYL4P12829 197 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SLC11A2P49281 568 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 OCA2Q04671 838 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 DNAJC3Q13217 504 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 NBPF20Q3BBV1 942 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 FUT11Q495W5 492 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SV2AQ7L0J3 742 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 TSPAN17Q96FV3 270 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 FAM96AQ9H5X1 160 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 NDE1Q9NXR1 346 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 PPP1R37O75864 691 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 SPRP35270 261 aaPredicted RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 NDST1P52848 882 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 CACUL1Q86Y37 369 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 GLIS3Q8NEA6 775 aa10.56□□□□□ -0.72
CHD3-201ENST00000330494 RUVBL2Q9Y230 463 aaKnown RBP10.56□□□□□ -0.72
CHD3-201ENST00000330494 FAM95CA0A1B0GW59 222 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 PYGBP11216 843 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 EPB42P16452 691 aa10.55□□□□□ -0.72
CHD3-201ENST00000330494 NEK2P51955 445 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms