RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 MMP8P22894 467 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 SLC1A1P43005 524 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 ZNF252P-AS1Q0IIN9 211 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 PTP4A2Q12974 167 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 MXD4Q14582 209 aaPredicted RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 ZPBP2Q6X784 338 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 DRAXINQ8NBI3 349 aaPredicted RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 EZH1Q92800 747 aaPredicted RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 GRID1Q9ULK0 1009 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 RFC1P35251 1148 aaPredicted RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 YARSP54577 528 aaKnown RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 MUM1Q2TAK8 710 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 IZUMO3Q5VZ72 239 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 PLEKHA7Q6IQ23 1121 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 RHBDF2Q6PJF5 856 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 WDTC1Q8N5D0 677 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 TMEM35BQ8NCS4 154 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 ATL2Q8NHH9 583 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 UBA3Q8TBC4 463 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 TMEM121Q9BTD3 319 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 RPF1Q9H9Y2 349 aaKnown RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 CPSF3Q9UKF6 684 aaKnown RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 PHTF1Q9UMS5 762 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 MOGSQ13724 837 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 C9orf131Q5VYM1 1079 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 MPZL3Q6UWV2 235 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 APBB1IPQ7Z5R6 666 aaPredicted RBP16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 JOSD2Q8TAC2 188 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 ZFAND2BQ8WV99 257 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 ANKRD36BP1Q96IX9 119 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 TWNKQ96RR1 684 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 CDT1Q9H211 546 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 AGTPBP1Q9UPW5 1226 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 SH3BP1Q9Y3L3 701 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 SCINQ9Y6U3 715 aa16.3■□□□□ 0.2
SHROOM1-201ENST00000319854 BANF1O75531 89 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 NRLP54845 237 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 SETDB1Q15047 1291 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 DSTYKQ6XUX3 929 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 AFG1LQ8WV93 481 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 FAM167AQ96KS9 214 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 CLEC11AQ9Y240 323 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 ABLIM1O14639 778 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 PSMA2P25787 234 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 CMPK2Q5EBM0 449 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 ARHGEF18Q6ZSZ5 1173 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 PHF13Q86YI8 300 aaPredicted RBP16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 CCNJLQ8IV13 435 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 NLRP7Q8WX94 980 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 MIPEPQ99797 713 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 GORASP1Q9BQQ3 440 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 PPP1R12CQ9BZL4 782 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 TRIM4Q9C037 500 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 NKIRAS1Q9NYS0 192 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 NINJ2Q9NZG7 142 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 CYTH4Q9UIA0 394 aa16.29■□□□□ 0.2
SHROOM1-201ENST00000319854 LACTBL1A8MY62 500 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 NVLO15381 856 aaKnown RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 IVDP26440 423 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ADCYAP1R1P41586 468 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ASPAP45381 313 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 PSMC1P62191 440 aaKnown RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 RCN2Q14257 317 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 JADE1Q6IE81 842 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 TRIM72Q6ZMU5 477 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 IP6K2Q9UHH9 426 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 BRCA1P38398 1863 aaKnown RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 TMEM191CA6NGB0 347 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 SGK1O00141 431 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 MAP3K6O95382 1288 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ITGBL1O95965 494 aaPredicted RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 STAG3L1P0CL83 205 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ABCD1P33897 745 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 C1QBPQ07021 282 aaKnown RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 GPS1Q13098 491 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 TAF5Q15542 800 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 CDO1Q16878 200 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 TSNAXIP1Q2TAA8 658 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 PTPN20Q4JDL3 420 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ZNF667Q5HYK9 610 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ARMCX2Q7L311 632 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 B4GALNT2Q8NHY0 566 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 LRRN4Q8WUT4 740 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 INPP5DQ92835 1189 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 FAM49AQ9H0Q0 323 aaPredicted RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ACKR2O00590 384 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 ARSEP51690 589 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 MCL1Q07820 350 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 TTLL4Q14679 1199 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 TAF1BQ53T94 588 aaPredicted RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 C1orf127Q8N9H9 656 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 HSPH1Q92598 858 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 MPHOSPH6Q99547 160 aaKnown RBP16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 SDCBP2Q9H190 292 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 XYLT2Q9H1B5 865 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 SMARCAD1Q9H4L7 1026 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 USH1CQ9Y6N9 552 aa16.28■□□□□ 0.2
SHROOM1-201ENST00000319854 CD48P09326 243 aa16.27■□□□□ 0.2
SHROOM1-201ENST00000319854 FGFR1P11362 822 aa16.27■□□□□ 0.2
SHROOM1-201ENST00000319854 ATP5DP30049 168 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms