RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 GJB7Q6PEY0 223 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 ILDR1Q86SU0 546 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 STX19Q8N4C7 294 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 FAM81AQ8TBF8 368 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 VPS50Q96JG6 964 aa11.94□□□□□ -0.5
VPS39-201ENST00000318006 ILKAPQ9H0C8 392 aaPredicted RBP11.94□□□□□ -0.5
VPS39-201ENST00000318006 ZSCAN5CA6NGD5 496 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 PRR23D1E9PI22 279 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 TPST1O60507 370 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 OCM2P0CE71 109 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 OCMP0CE72 109 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 PRR23D2P0DMB1 279 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 CDC25CP30307 473 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 PTENP60484 403 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 CEP78Q5JTW2 689 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ATF7IP2Q5U623 682 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 CCDC81Q6ZN84 652 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 RFWD2Q8NHY2 731 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 SPATA18Q8TC71 538 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 URGCPQ8TCY9 931 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 GTF3C2Q8WUA4 911 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 PRCCQ92733 491 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 CENPTQ96BT3 561 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ZFYVE19Q96K21 471 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 COQ7Q99807 217 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 PACSIN1Q9BY11 444 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ABCF3Q9NUQ8 709 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 PRMT7Q9NVM4 692 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 DAPK2Q9UIK4 370 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 KIF13AQ9H1H9 1805 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 SAC3D1A6NKF1 404 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 HBP1O60381 514 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 CST8O60676 142 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 GLRA3O75311 464 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 IL18RAPO95256 599 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 PDGFRAP16234 1089 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ERVK-9P63128 1117 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 DMPKQ09013 629 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 TJAP1Q5JTD0 557 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ZNF677Q86XU0 584 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 CD302Q8IX05 232 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 TNIP2Q8NFZ5 429 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 MCEEQ96PE7 176 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 TMEM237Q96Q45 408 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 SAR1AQ9NR31 198 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ERAP1Q9NZ08 941 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 APPL1Q9UKG1 709 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 RIPK2O43353 540 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 LZTS3O60299 673 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 ATP6V1E1P36543 226 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 C4orf22Q6V702 233 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 TRIM69Q86WT6 500 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ANKRD13AQ8IZ07 590 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 LRRC71Q8N4P6 559 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 C1orf131Q8NDD1 294 aaKnown RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 GDPD5Q8WTR4 605 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 TSPAN17Q96FV3 270 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 FAM163AQ96GL9 167 aaPredicted RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 SLC4A9Q96Q91 983 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 RSAD1Q9HA92 442 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 ATAD3AQ9NVI7 634 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 NSMCE4AQ9NXX6 385 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 NAALADL1Q9UQQ1 740 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 DYTNA2CJ06 578 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 E5RI56 91 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 CES2O00748 559 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 LCP1P13796 627 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 PON1P27169 355 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 TBL3Q12788 808 aaKnown RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 MTM1Q13496 603 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 KRT72Q14CN4 511 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 PCNX4Q63HM2 1172 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 B3GNT6Q6ZMB0 384 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 LUZP2Q86TE4 346 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 HEATR4Q86WZ0 1026 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 SAMD3Q8N6K7 520 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 EIF1ADQ8N9N8 165 aaKnown RBP11.93□□□□□ -0.5
VPS39-201ENST00000318006 KRT35Q92764 455 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 EGFL8Q99944 293 aa11.93□□□□□ -0.5
VPS39-201ENST00000318006 BCL10O95999 233 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 POLBP06746 335 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 KCTD21Q4G0X4 260 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 SPDYCQ5MJ68 293 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 TRIM63Q969Q1 353 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 NIF3L1Q9GZT8 377 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 MYLK2Q9H1R3 596 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 TMEM245Q9H330 911 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 MMADHCQ9H3L0 296 aaPredicted RBP11.92□□□□□ -0.5
VPS39-201ENST00000318006 MYO1GB0I1T2 1018 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 APOA4P06727 396 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 C21orf59P57076 290 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 THEMIS2Q5TEJ8 643 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 ZBTB49Q6ZSB9 765 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 PPHLN1Q8NEY8 458 aaKnown RBP11.92□□□□□ -0.5
VPS39-201ENST00000318006 ATP8B4Q8TF62 1192 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 SCFD1Q8WVM8 642 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 GLMNQ92990 594 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 PI4K2AQ9BTU6 479 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 MYO1DO94832 1006 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 BACE1P56817 501 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms