RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 LRRN4Q8WUT4 740 aa13.52□□□□□ -0.24
HIF3A-204ENST00000300862 CPB2Q96IY4 423 aa13.52□□□□□ -0.24
HIF3A-204ENST00000300862 FZD8Q9H461 694 aa13.52□□□□□ -0.24
HIF3A-204ENST00000300862 RXFP1Q9HBX9 757 aa13.52□□□□□ -0.24
HIF3A-204ENST00000300862 STRIP2Q9ULQ0 834 aa13.52□□□□□ -0.24
HIF3A-204ENST00000300862 PHTF1Q9UMS5 762 aa13.52□□□□□ -0.24
HIF3A-204ENST00000300862 MCM3APO60318 1980 aa13.52□□□□□ -0.24
HIF3A-204ENST00000300862 M0QYV0 167 aa13.52□□□□□ -0.25
HIF3A-204ENST00000300862 MICAL2O94851 1124 aa13.52□□□□□ -0.25
HIF3A-204ENST00000300862 PTPN7P35236 360 aa13.52□□□□□ -0.25
HIF3A-204ENST00000300862 BASP1P80723 227 aaKnown RBP13.52□□□□□ -0.25
HIF3A-204ENST00000300862 MBTD1Q05BQ5 628 aa13.52□□□□□ -0.25
HIF3A-204ENST00000300862 SURF1Q15526 300 aa13.52□□□□□ -0.25
HIF3A-204ENST00000300862 HADHQ16836 314 aaKnown RBP13.52□□□□□ -0.25
HIF3A-204ENST00000300862 FBXO36Q8NEA4 188 aa13.52□□□□□ -0.25
HIF3A-204ENST00000300862 PIWIL1Q96J94 861 aaKnown RBP13.52□□□□□ -0.25
HIF3A-204ENST00000300862 RABGEF1Q9UJ41 708 aa13.52□□□□□ -0.25
HIF3A-204ENST00000300862 CNMDO75829 334 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 MAP3K6O95382 1288 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 KRT7P08729 469 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 EIF3EP60228 445 aaKnown RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 PTPN11Q06124 597 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 SPARCL1Q14515 664 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 CDO1Q16878 200 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 CEP128Q6ZU80 1094 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 BBS12Q6ZW61 710 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 POLNQ7Z5Q5 900 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 PPIL6Q8IXY8 311 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 FBF1Q8TES7 1133 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 HEXIM2Q96MH2 286 aaKnown RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 PEBP4Q96S96 227 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 C2orf40Q9H1Z8 148 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 ALG13Q9NP73 1137 aaKnown RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 CSADQ9Y600 493 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 STAG3L1P0CL83 205 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 CDC25CP30307 473 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 MKRN3Q13064 507 aaKnown RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 C15orf59Q2T9L4 293 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 FAM102AQ5T9C2 384 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 MAP1SQ66K74 1059 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 BZW1Q7L1Q6 419 aaKnown RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 TDRPQ86YL5 185 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 EGFL6Q8IUX8 553 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 NAT8LQ8N9F0 302 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 LHX5Q9H2C1 402 aa13.51□□□□□ -0.25
HIF3A-204ENST00000300862 PSMC3IPQ9P2W1 217 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 XPO7Q9UIA9 1087 aaKnown RBP13.51□□□□□ -0.25
HIF3A-204ENST00000300862 A0A087WZ62 844 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 MED7O43513 233 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 LGR5O75473 907 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 TXNP10599 105 aaKnown RBP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 RBP3P10745 1247 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 ARL4CP56559 192 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 GEMIN4P57678 1058 aaKnown RBP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 HHATQ5VTY9 493 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 TRNP1Q6NT89 227 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 LVRNQ6Q4G3 990 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 IGDCC3Q8IVU1 814 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 NLGN2Q8NFZ4 835 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 SPATA18Q8TC71 538 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 ERP27Q96DN0 273 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 FDXACB1Q9BRP7 624 aaPredicted RBP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 BCO2Q9BYV7 579 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 MYLK2Q9H1R3 596 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 UBN1Q9NPG3 1134 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 USP18Q9UMW8 372 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 CHMP2BQ9UQN3 213 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 PRPF4O43172 522 aaKnown RBP eCLIP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 TYROBPO43914 113 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 GCLCP48506 637 aaPredicted RBP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 CCNHP51946 323 aaPredicted RBP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 SATB1Q01826 763 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 NR1H3Q13133 447 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 NAIF1Q69YI7 327 aaPredicted RBP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 C12orf29Q8N999 325 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 LRRC8CQ8TDW0 803 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 TMEM176AQ96HP8 235 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 PAFAH2Q99487 392 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 ADPGKQ9BRR6 497 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 IFT122Q9HBG6 1241 aa13.5□□□□□ -0.25
HIF3A-204ENST00000300862 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 NOP53Q9NZM5 478 aaKnown RBP13.5□□□□□ -0.25
HIF3A-204ENST00000300862 KAT6AQ92794 2004 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 DIAPH2O60879 1101 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 AVILO75366 819 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 RNF8O76064 485 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 VTNP04004 478 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 ADRA1DP25100 572 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 RGS7P49802 495 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 EFHC2Q5JST6 749 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 RNF43Q68DV7 783 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 C1orf228Q6PIY5 440 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 PLPPR4Q7Z2D5 763 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 PALM2Q8IXS6 379 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 GBP7Q8N8V2 638 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-204ENST00000300862 TMEM237Q96Q45 408 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 ETNK1Q9HBU6 452 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 GPATCH2LQ9NWQ4 482 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 TNFSF13BQ9Y275 285 aa13.49□□□□□ -0.25
HIF3A-204ENST00000300862 LTBP3Q9NS15 1303 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms