RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LRRC55Q6ZSA7 311 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 SLC47A2Q86VL8 602 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 TCP10LQ8TDR4 215 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 MPP4Q96JB8 637 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 RPF1Q9H9Y2 349 aaKnown RBP15.99■□□□□ 0.15
SHH-201ENST00000297261 STX18Q9P2W9 335 aaKnown RBP15.99■□□□□ 0.15
SHH-201ENST00000297261 DDX60Q8IY21 1712 aaKnown RBP15.99■□□□□ 0.15
SHH-201ENST00000297261 SYCE1LA8MT33 242 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 M0QYV0 167 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 AKAP10O43572 662 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 PLA2G6O60733 806 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 ADRA1DP25100 572 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 TEDDM1Q5T9Z0 273 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 NIPA1Q7RTP0 329 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 RAB44Q7Z6P3 723 aaPredicted RBP15.99■□□□□ 0.15
SHH-201ENST00000297261 TBX20Q9UMR3 447 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 SCN7AQ01118 1682 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 CCDC78A2IDD5 438 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 OATP04181 439 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 OAZ1P54368 228 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 C11orf63Q6NUN7 778 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 IFNEQ86WN2 208 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 PPIL6Q8IXY8 311 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 CHST7Q9NS84 486 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 BFARQ9NZS9 450 aa15.99■□□□□ 0.15
SHH-201ENST00000297261 RASSF9O75901 435 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 KRT36O76013 467 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 CYP11B1P15538 503 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 NPTX2P47972 431 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 FRMPD4Q14CM0 1322 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 TRMT5Q32P41 509 aaKnown RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 CATSPERGQ6ZRH7 1159 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 ELMO3Q96BJ8 720 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 KLRG1Q96E93 195 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 MRPL4Q9BYD3 311 aaKnown RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 GSTA4O15217 222 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 GRIN3BO60391 1043 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 PYGBP11216 843 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 SSTR1P30872 391 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 ATICP31939 592 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 TCF7P36402 384 aaPredicted RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 ZNF280AP59817 542 aaPredicted RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 FASTKD1Q53R41 847 aaKnown RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 LRRC71Q8N4P6 559 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 TTC8Q8TAM2 541 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 ZNF75CPQ92670 426 aaPredicted RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 DACT3Q96B18 629 aaPredicted RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 APPL1Q9UKG1 709 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 VAV3Q9UKW4 847 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 SNX5Q9Y5X3 404 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 ATP9BO43861 1147 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 TPST1O60507 370 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 GZMAP12544 262 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 NUDT2P50583 147 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 FOXD4Q12950 439 aaPredicted RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 C1orf186Q6ZWK4 172 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 POU5F2Q8N7G0 328 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 AGAP3Q96P47 875 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 HSD17B14Q9BPX1 270 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 NEUROG2Q9H2A3 272 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 TAS2R14Q9NYV8 317 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 MYO5AQ9Y4I1 1855 aaKnown RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 IGSF9BQ9UPX0 1349 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 E2F6O75461 281 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 SLC4A1P02730 911 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 SUPT20HL2P0C7V6 817 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 MARCKSL1P49006 195 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 CBWD2Q8IUF1 395 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 DHX38Q92620 1227 aaKnown RBP15.98■□□□□ 0.15
SHH-201ENST00000297261 RMDN2Q96LZ7 410 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 PWWP2AQ96N64 755 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 ZNF229Q9UJW7 825 aa15.98■□□□□ 0.15
SHH-201ENST00000297261 SRGAP2BP0DMP2 458 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 MMP13P45452 471 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 KCNT1Q5JUK3 1230 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 LAYNQ6UX15 382 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 MOB2Q70IA6 237 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 GPRC5AQ8NFJ5 357 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 FEZF2Q8TBJ5 459 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 PPP2R3CQ969Q6 453 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 SIKE1Q9BRV8 207 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 ABT1Q9ULW3 272 aaKnown RBP15.97■□□□□ 0.15
SHH-201ENST00000297261 PIAS1O75925 651 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 TMEM132BQ14DG7 1078 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 ARSHQ5FYA8 562 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 HYIQ5T013 277 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 MAP1SQ66K74 1059 aaPredicted RBP15.97■□□□□ 0.15
SHH-201ENST00000297261 PRELID2Q8N945 189 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 VPS39Q96JC1 886 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 LRRC4Q9HBW1 653 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 UBIAD1Q9Y5Z9 338 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 ATXN2Q99700 1313 aaKnown RBP15.97■□□□□ 0.15
SHH-201ENST00000297261 IRF6O14896 467 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 HLA-DRAP01903 254 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 ATP6V1C1P21283 382 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 DUPD1Q68J44 220 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 VSIG10LQ86VR7 867 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 TMPRSS6Q8IU80 811 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 FGFBP2Q9BYJ0 223 aa15.97■□□□□ 0.15
SHH-201ENST00000297261 MRPL40Q9NQ50 206 aaKnown RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms