RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SESN2P58004 480 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 BNIPLQ7Z465 357 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ATPAF2Q8N5M1 289 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 TBC1D19Q8N5T2 526 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 KIAA0895Q8NCT3 520 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 PTPRN2Q92932 1015 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 MCRS1Q96EZ8 462 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ADAM33Q9BZ11 813 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 FAM49AQ9H0Q0 323 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 A0A087X0B3 334 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 MAP2K7O14733 419 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 KCNK10P57789 538 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 INAQ16352 499 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF568Q3ZCX4 644 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 Q4G0T1 1027 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 LRRC49Q8IUZ0 686 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 FOPNLQ96NB1 174 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SERPINB12Q96P63 405 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 PARVBQ9HBI1 364 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 CD274Q9NZQ7 290 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ITGB1BP2Q9UKP3 347 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 KCNQ2O43526 872 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 IL12RB1P42701 662 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 CHI3L2Q15782 390 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 UGP2Q16851 508 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 STRIP1Q5VSL9 837 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ARMC3Q5W041 872 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 LPAR1Q92633 364 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 KRT84Q9NSB2 600 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SNTNA6NMZ2 147 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 E7ENQ6 273 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SGO1Q5FBB7 561 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 MSL3Q8N5Y2 521 aaKnown RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 QTRT2Q9H974 415 aaKnown RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 NDUFA13Q9P0J0 144 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SPAG6O75602 509 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF23P17027 643 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SERPINB9P50453 376 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 MAPK11Q15759 364 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 CLEC10AQ8IUN9 316 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 RIT2Q99578 217 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 CELF4Q9BZC1 486 aaKnown RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SMARCAD1Q9H4L7 1026 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 APPL1Q9UKG1 709 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 TRIP11Q15643 1979 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ELMSAN1Q6PJG2 1045 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 RAVER2Q9HCJ3 691 aaKnown RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 N4BP2Q86UW6 1770 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 TRPC5OSA6NMA1 111 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ATMINO43313 823 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 CDC42EP5Q6NZY7 148 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SCN4BQ8IWT1 228 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 UBASH3BQ8TF42 649 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 TASP1Q9H6P5 420 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 TRIM39Q9HCM9 518 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 MTRF1O75570 445 aaKnown RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 PRR5LQ6MZQ0 368 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 SCUBE1Q8IWY4 988 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 GMCL1P1Q8NEA9 526 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ENKURQ8TC29 256 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 KIFC1Q9BW19 673 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 F8VZ95 297 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 IL6P05231 212 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 TMEM119Q4V9L6 283 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 KRT73Q86Y46 540 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ASAP3Q8TDY4 903 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 PACSIN1Q9BY11 444 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 GTF3C4Q9UKN8 822 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 S100A9P06702 114 aaKnown RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ADORA2BP29275 332 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 PIGHQ14442 188 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ZC2HC1CQ53FD0 456 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 FAM182BQ5T319 152 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 TDRD3Q9H7E2 651 aaKnown RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 AP3B1O00203 1094 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 O00370 1275 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 H2AFYO75367 372 aaKnown RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 COILP38432 576 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ATAD3BQ5T9A4 648 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 CIAPIN1Q6FI81 312 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 HES6Q96HZ4 224 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 MOV10L1Q9BXT6 1211 aaKnown RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ACAD9Q9H845 621 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 PKP3Q9Y446 797 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 NUP188Q5SRE5 1749 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 LRRC10BA6NIK2 292 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF197O14709 1029 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 MSH4O15457 936 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 SMNDC1O75940 238 aaKnown RBP eCLIP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 SERPIND1P05546 499 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 CYP11B2P19099 503 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 FEN1P39748 380 aaKnown RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 TPI1P60174 286 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 FAM45BPQ6NSW5 357 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 NEK10Q6ZWH5 1172 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 RPAP3Q9H6T3 665 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 RGL2O15211 777 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 HUS1O60921 280 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ENTPD3O75355 529 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 KDELC2Q7Z4H8 507 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms