RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KPNA7A9QM74 516 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 F5H423 210 aaPredicted RBP12.05□□□□□ -0.48
CUX1-202ENST00000292538 PRPSAP2O60256 369 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 MYCP01106 439 aaPredicted RBP12.05□□□□□ -0.48
CUX1-202ENST00000292538 TFE3P19532 575 aaPredicted RBP12.05□□□□□ -0.48
CUX1-202ENST00000292538 MDH1P40925 334 aaKnown RBP12.05□□□□□ -0.48
CUX1-202ENST00000292538 GDF10P55107 478 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 TAP1Q03518 808 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 LRRC14Q15048 493 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 KYAT1Q16773 422 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 ZC3H12AQ5D1E8 599 aaKnown RBP12.05□□□□□ -0.48
CUX1-202ENST00000292538 ANKMY2Q8IV38 441 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 FAM71DQ8N9W8 422 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 RBM15Q96T37 977 aaKnown RBP eCLIP12.05□□□□□ -0.481e-11■■■■□ 20.4
CUX1-202ENST00000292538 KCNK9Q9NPC2 374 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 UNCXA6NJT0 531 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 M0QZ92 97 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 KRT7P08729 469 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 FGFR1P11362 822 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 RARGP13631 454 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 KDELR1P24390 212 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 PTK6Q13882 451 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 ZNF268Q14587 947 aaPredicted RBP12.05□□□□□ -0.48
CUX1-202ENST00000292538 NBPF20Q3BBV1 942 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 C17orf99Q6UX52 265 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 KDM7AQ6ZMT4 941 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 SLC2A14Q8TDB8 520 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 HASPINQ8TF76 798 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 AAASQ9NRG9 546 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 HOMER3Q9NSC5 361 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 ASNSD1Q9NWL6 643 aa12.05□□□□□ -0.48
CUX1-202ENST00000292538 TP73O15350 636 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 GPD1P21695 349 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 IVDP26440 423 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 CDH5P33151 784 aaPredicted RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 MAN1A1P33908 653 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 MLH1P40692 756 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 PPP2R2AP63151 447 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 SLC25A11Q02978 314 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 GAD2Q05329 585 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 TRNP1Q6NT89 227 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 ANKRD42Q8N9B4 389 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 APPL2Q8NEU8 664 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 PEBP4Q96S96 227 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 TXLNGYQ9BZA5 131 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 VPS37BQ9H9H4 285 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 DDX56Q9NY93 547 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 WHRNQ9P202 907 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 LCMT1Q9UIC8 334 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 POC1B-GALNT4F8VUJ3 575 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 HUS1O60921 280 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 IVLP07476 585 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 PFKMP08237 780 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 ELNP15502 786 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 PECAM1P16284 738 aaPredicted RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 FLT3LGP49771 235 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 EIF3BP55884 814 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 BASP1P80723 227 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 PURAQ00577 322 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 FASTKD3Q14CZ7 662 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 SPATA18Q8TC71 538 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 FAM172AQ8WUF8 416 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 GAD1Q99259 594 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 APBA2Q99767 749 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 MED10Q9BTT4 135 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 OSBPL7Q9BZF2 842 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 UBQLN1Q9UMX0 589 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 INPP5FQ9Y2H2 1132 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 NEU2Q9Y3R4 380 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 CDY2AQ9Y6F7 541 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 GRIN2DO15399 1336 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 H7C0C1 242 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 I3L4J1 428 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 RPS6KA5O75582 802 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 AKR1A1P14550 325 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 CREB1P16220 341 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 GBP1P32455 592 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 ATP5OP48047 213 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 DARS2Q6PI48 645 aaKnown RBP12.04□□□□□ -0.48
CUX1-202ENST00000292538 LCLAT1Q6UWP7 414 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 TRPV1Q8NER1 839 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 WDR35Q9P2L0 1181 aa12.04□□□□□ -0.48
CUX1-202ENST00000292538 CASTOR2A6NHX0 329 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 SDC4P31431 198 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 THPOP40225 353 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 EIF3EP60228 445 aaKnown RBP12.03□□□□□ -0.48
CUX1-202ENST00000292538 ZBED8Q8IZ13 594 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 ARFGAP2Q8N6H7 521 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 WNT8BQ93098 351 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 PLEKHA5Q9HAU0 1116 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 ST3GAL5Q9UNP4 418 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 MBLAC1A4D2B0 266 aaPredicted RBP12.03□□□□□ -0.48
CUX1-202ENST00000292538 TRUB2O95900 331 aaKnown RBP12.03□□□□□ -0.48
CUX1-202ENST00000292538 GNAT1P11488 350 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 HOXD8P13378 290 aaPredicted RBP12.03□□□□□ -0.48
CUX1-202ENST00000292538 VCPP55072 806 aaKnown RBP12.03□□□□□ -0.48
CUX1-202ENST00000292538 FAXCQ5TGI0 409 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 WSCD1Q658N2 575 aa12.03□□□□□ -0.48
CUX1-202ENST00000292538 GDF6Q6KF10 455 aaPredicted RBP12.03□□□□□ -0.48
CUX1-202ENST00000292538 FAM228AQ86W67 206 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms