RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MSS51Q4VC12 460 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 NUGGCQ68CJ6 796 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 CEP128Q6ZU80 1094 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 ANKS4BQ8N8V4 417 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 SPON1Q9HCB6 807 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 ITGA11Q9UKX5 1188 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 EFR3BQ9Y2G0 817 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 PFKMP08237 780 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 SMPD1P17405 629 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 SCTRP47872 440 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 DPY19L2Q6NUT2 758 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 CENPUQ71F23 418 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 FAM71DQ8N9W8 422 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 CMASQ8NFW8 434 aaPredicted RBP21.03■□□□□ 0.96
VPS53-201ENST00000291074 CKAP2Q8WWK9 683 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 RXFP2Q8WXD0 754 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 RSAD2Q8WXG1 361 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 FAXDC2Q96IV6 333 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 NSRP1Q9H0G5 558 aaKnown RBP21.03■□□□□ 0.96
VPS53-201ENST00000291074 GGT7Q9UJ14 662 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 C2CD2Q9Y426 696 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 COL1A2P08123 1366 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 RBM47A0AV96 593 aaKnown RBP21.03■□□□□ 0.96
VPS53-201ENST00000291074 BTBD19C9JJ37 291 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 ALOX15BO15296 676 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 NPTXRO95502 500 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 HIF1AQ16665 826 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 FNBP1LQ5T0N5 605 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 CYP4V2Q6ZWL3 525 aaPredicted RBP21.03■□□□□ 0.96
VPS53-201ENST00000291074 TTC25Q96NG3 672 aa21.03■□□□□ 0.96
VPS53-201ENST00000291074 FAM49AQ9H0Q0 323 aaPredicted RBP21.03■□□□□ 0.96
VPS53-201ENST00000291074 ACTR5Q9H9F9 607 aaPredicted RBP21.03■□□□□ 0.96
VPS53-201ENST00000291074 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.03■□□□□ 0.96
VPS53-201ENST00000291074 ADCY6O43306 1168 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 SNX3O60493 162 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 GPD1P21695 349 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 HNRNPH1P31943 449 aaKnown RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 STX2P32856 288 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 EIF3EP60228 445 aaKnown RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 ITIH4Q14624 930 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 PKN2Q16513 984 aaKnown RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 GOLGA7BQ2TAP0 167 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 EMID1Q96A84 441 aaPredicted RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 L3MBTL3Q96JM7 780 aaPredicted RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 ZMAT2Q96NC0 199 aaKnown RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 MRPL45Q9BRJ2 306 aaKnown RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 SETD4Q9NVD3 440 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 HES2Q9Y543 173 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 CLUHO75153 1309 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 MMP3P08254 477 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 PDGFRAP16234 1089 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 ZNF143P52747 638 aaPredicted RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 GPX6P59796 221 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 EFTUD2Q15029 972 aaKnown RBP eCLIP21.02■□□□□ 0.96
VPS53-201ENST00000291074 LACTB2Q53H82 288 aaPredicted RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 TRABD2AQ86V40 505 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 TTC13Q8NBP0 860 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 WDR83Q9BRX9 315 aaKnown RBP21.02■□□□□ 0.96
VPS53-201ENST00000291074 NT5C1AQ9BXI3 368 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 FAM49BQ9NUQ9 324 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 ASNSD1Q9NWL6 643 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 SNTG2Q9NY99 539 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 NME7Q9Y5B8 376 aa21.02■□□□□ 0.96
VPS53-201ENST00000291074 C2CD4BA6NLJ0 364 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 TMEM63AO94886 807 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 CDH6P55285 790 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 ATP11AP98196 1134 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 LCLAT1Q6UWP7 414 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 ACOT1Q86TX2 421 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 PPIL6Q8IXY8 311 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 TGS1Q96RS0 853 aaKnown RBP21.01■□□□□ 0.95
VPS53-201ENST00000291074 LPIN3Q9BQK8 851 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 KDM4CQ9H3R0 1056 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 ABCF3Q9NUQ8 709 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 NKIRAS1Q9NYS0 192 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 TUBGCP4Q9UGJ1 667 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 APOC4-APOC2K7ER74 178 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 APOC2P02655 101 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 RBP3P10745 1247 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 SSTR1P30872 391 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 GLRA4Q5JXX5 417 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 SYCP2LQ5T4T6 812 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 PPP1R26Q5T8A7 1209 aaPredicted RBP21.01■□□□□ 0.95
VPS53-201ENST00000291074 DPP9Q86TI2 863 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 ZC3H18Q86VM9 953 aaKnown RBP21.01■□□□□ 0.95
VPS53-201ENST00000291074 NAT8LQ8N9F0 302 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 SPATA18Q8TC71 538 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 MS4A4AQ96JQ5 239 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 GPATCH2LQ9NWQ4 482 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 SNX9Q9Y5X1 595 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 CCL15-CCL14A0A0B4J2E2 113 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 OAS1P00973 400 aaKnown RBP21.01■□□□□ 0.95
VPS53-201ENST00000291074 CCL15Q16663 113 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 C4orf33Q8N1A6 199 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 RIBC1Q8N443 379 aaPredicted RBP21.01■□□□□ 0.95
VPS53-201ENST00000291074 PAIP2Q9BPZ3 127 aaKnown RBP21.01■□□□□ 0.95
VPS53-201ENST00000291074 CNPY3Q9BT09 278 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 EIF2AQ9BY44 585 aaKnown RBP21.01■□□□□ 0.95
VPS53-201ENST00000291074 CDHR5Q9HBB8 845 aa21.01■□□□□ 0.95
VPS53-201ENST00000291074 HCRTO43612 131 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms