RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CLEC20AQ6ZU45 233 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 ARCQ7LC44 396 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 FAM35AQ86V20 835 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 RHOT1Q8IXI2 618 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 MMGT1Q8N4V1 131 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 GPR161Q8N6U8 529 aaKnown RBP14.85□□□□□ -0.03
SS18-201ENST00000269137 RNPC3Q96LT9 517 aaKnown RBP14.85□□□□□ -0.03
SS18-201ENST00000269137 NAP1L3Q99457 506 aaPredicted RBP14.85□□□□□ -0.03
SS18-201ENST00000269137 MED10Q9BTT4 135 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 UBXN6Q9BZV1 441 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 FAN1Q9Y2M0 1017 aa14.85□□□□□ -0.03
SS18-201ENST00000269137 F8VP50 259 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 DGKIO75912 1065 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 GALTP07902 379 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 RAG1P15918 1043 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 PSMA2P25787 234 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 SLC11A1P49279 550 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 TSPY1Q01534 308 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 CC2D1AQ6P1N0 951 aaPredicted RBP14.84□□□□□ -0.03
SS18-201ENST00000269137 PIGZQ86VD9 579 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 SCUBE3Q8IX30 993 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 TMEM199Q8N511 208 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 OR10T2Q8NGX3 314 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 KHSRPQ92945 711 aaKnown RBP eCLIP14.84□□□□□ -0.033e-7■■■■□ 20.1
SS18-201ENST00000269137 TOP1MTQ969P6 601 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 PLVAPQ9BX97 442 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 MCOLN1Q9GZU1 580 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 PRDM5Q9NQX1 630 aaPredicted RBP14.84□□□□□ -0.03
SS18-201ENST00000269137 KRT82Q9NSB4 513 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 MARCH5Q9NX47 278 aa14.84□□□□□ -0.03
SS18-201ENST00000269137 C2CD4BA6NLJ0 364 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 CSF2RAP15509 400 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 ZNF143P52747 638 aaPredicted RBP14.83□□□□□ -0.04
SS18-201ENST00000269137 ELAVL2Q12926 359 aaKnown RBP14.83□□□□□ -0.04
SS18-201ENST00000269137 SLC26A9Q7LBE3 791 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 KATNAL2Q8IYT4 538 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 MYLPFQ96A32 169 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 SMARCD1Q96GM5 515 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 CNPY3Q9BT09 278 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 CSNK1G1Q9HCP0 422 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 USTQ9Y2C2 406 aa14.83□□□□□ -0.04
SS18-201ENST00000269137 PIK3R2O00459 728 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 AP1G2O75843 785 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 BEST1O76090 585 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 FGGP02679 453 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 AMHP03971 560 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 PYGMP11217 842 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 FGFR3P22607 806 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 TAS2R40P59535 323 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 RNASE9P60153 205 aaKnown RBP14.82□□□□□ -0.04
SS18-201ENST00000269137 C2orf54Q08AI8 447 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 ZNF211Q13398 564 aaPredicted RBP14.82□□□□□ -0.04
SS18-201ENST00000269137 MRPL58Q14197 206 aaKnown RBP14.82□□□□□ -0.04
SS18-201ENST00000269137 SEL1L2Q5TEA6 688 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 LRRTM3Q86VH5 581 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 EMC1Q8N766 993 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 ANKRD7Q92527 254 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 PIWIL1Q96J94 861 aaKnown RBP14.82□□□□□ -0.04
SS18-201ENST00000269137 SMOQ99835 787 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 RBM12Q9NTZ6 932 aaKnown RBP14.82□□□□□ -0.04
SS18-201ENST00000269137 SF3B1O75533 1304 aaKnown RBP eCLIP14.82□□□□□ -0.044e-6■■■■■ 96
SS18-201ENST00000269137 MKI67P46013 3256 aaKnown RBP14.82□□□□□ -0.04
SS18-201ENST00000269137 DPYSL4O14531 572 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 BAIAP3O94812 1187 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 UPP2O95045 317 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 GPD1P21695 349 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 VARS2Q5ST30 1063 aaKnown RBP14.82□□□□□ -0.04
SS18-201ENST00000269137 FAM171A1Q5VUB5 890 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 POLNQ7Z5Q5 900 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 RXFP2Q8WXD0 754 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 GPR62Q9BZJ7 368 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 ZCWPW1Q9H0M4 648 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 TMLHEQ9NVH6 421 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 ASNSD1Q9NWL6 643 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 HCSTQ9UBK5 93 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 VWA8A3KMH1 1905 aa14.82□□□□□ -0.04
SS18-201ENST00000269137 PTPRDP23468 1912 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 CCDC188H7C350 402 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 LRCH4O75427 683 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 LCP1P13796 627 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 PDGFRAP16234 1089 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 EN2P19622 333 aaPredicted RBP14.81□□□□□ -0.04
SS18-201ENST00000269137 PCK1P35558 622 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 FLT3P36888 993 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 BCAR1P56945 870 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 MAP3K7CLP57077 242 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 TAF5Q15542 800 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 LONRF2Q1L5Z9 754 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 EFHC1Q5JVL4 640 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 DAB2IPQ5VWQ8 1189 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 TRNP1Q6NT89 227 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 FUT10Q6P4F1 479 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 C4orf50Q6ZRC1 276 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 DCP1BQ8IZD4 617 aaKnown RBP14.81□□□□□ -0.04
SS18-201ENST00000269137 ARFGAP1Q8N6T3 406 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 ZMIZ2Q8NF64 920 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 EXD1Q8NHP7 514 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 ZNF689Q96CS4 500 aaPredicted RBP14.81□□□□□ -0.04
SS18-201ENST00000269137 TMEM209Q96SK2 561 aa14.81□□□□□ -0.04
SS18-201ENST00000269137 LRRC4Q9HBW1 653 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms