RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 HAS3O00219 553 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 SLCO1A2P46721 670 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 FKBP1BP68106 108 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 DPYSL3Q14195 570 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 OTUD6BQ8N6M0 293 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 CCT8L1PA6NM43 557 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 PDHXO00330 501 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 MDM4O15151 490 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 ECM2O94769 699 aaPredicted RBP11.7□□□□□ -0.54
MSH3-201ENST00000265081 CD48P09326 243 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 GTF2A2P52657 109 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 NDST1P52848 882 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 CCDC15Q0P6D6 951 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 LLGL1Q15334 1064 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 IQSEC1Q6DN90 963 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 UNC93AQ86WB7 457 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 CCDC25Q86WR0 208 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 CCDC197Q8NCU1 140 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 ACTL9Q8TC94 416 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 SGSM3Q96HU1 749 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 ACAP3Q96P50 834 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 TMEM121Q9BTD3 319 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 SPON1Q9HCB6 807 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 ASNSD1Q9NWL6 643 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 GJD2Q9UKL4 321 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 LRRD1A4D1F6 860 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 A6NJR5 290 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 H3BRB1 525 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 F2P00734 622 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 ZNF286BP0CG31 522 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 ADCYAP1R1P41586 468 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 GPS1Q13098 491 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 IFT88Q13099 833 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 FASTKD3Q14CZ7 662 aaKnown RBP11.7□□□□□ -0.54
MSH3-201ENST00000265081 CCDC14Q49A88 953 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 ADGRD1Q6QNK2 874 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 FAM183BPQ6ZVS7 135 aa11.7□□□□□ -0.54
MSH3-201ENST00000265081 TUT1Q9H6E5 874 aaKnown RBP11.7□□□□□ -0.54
MSH3-201ENST00000265081 NXF1Q9UBU9 619 aaKnown RBP11.7□□□□□ -0.54
MSH3-201ENST00000265081 SMIM35A0A1B0GVV1 85 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 RRN3P2A6NIE6 340 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 VTNP04004 478 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 GPD1P21695 349 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 RPL22P35268 128 aaKnown RBP11.69□□□□□ -0.54
MSH3-201ENST00000265081 TTC31Q49AM3 519 aaPredicted RBP11.69□□□□□ -0.54
MSH3-201ENST00000265081 FAM47CQ5HY64 1035 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 MORN1Q5T089 497 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 SH2D5Q6ZV89 423 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 GPR142Q7Z601 462 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 CDR2LQ86X02 465 aaPredicted RBP11.69□□□□□ -0.54
MSH3-201ENST00000265081 ZNF276Q8N554 614 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 BRI3BPQ8WY22 251 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 ZMAT2Q96NC0 199 aaKnown RBP11.69□□□□□ -0.54
MSH3-201ENST00000265081 SELENOSQ9BQE4 189 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 USP29Q9HBJ7 922 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 GDAP2Q9NXN4 497 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.69□□□□□ -0.54
MSH3-201ENST00000265081 TLDC2A0PJX2 215 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 GLTPD2A6NH11 291 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 PIRO00625 290 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 KIAA0754O94854 1291 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 ATF7P17544 494 aaPredicted RBP11.69□□□□□ -0.54
MSH3-201ENST00000265081 MAGEA3P43357 314 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 OSTNP61366 133 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 PDK2Q15119 407 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 GJC2Q5T442 439 aaPredicted RBP11.69□□□□□ -0.54
MSH3-201ENST00000265081 TTC30AQ86WT1 665 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 TBCBQ99426 244 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 CXCL16Q9H2A7 254 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 ZNF148Q9UQR1 794 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 NPTXRO95502 500 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 FAM163BP0C2L3 166 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 TGM2P21980 687 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 AXLP30530 894 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 PTPN9P43378 593 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 SCTRP47872 440 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 LIG3P49916 1009 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 FNBP1LQ5T0N5 605 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 NT5C1AQ9BXI3 368 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 TSPAN16Q9UKR8 245 aa11.69□□□□□ -0.54
MSH3-201ENST00000265081 KAT6AQ92794 2004 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 M0QYV0 167 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 CST8O60676 142 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 TOMM70O94826 608 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 MSS51Q4VC12 460 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 SPDYAQ5MJ70 313 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 ANKRD22Q5VYY1 191 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 KAZNQ674X7 775 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 SLC27A1Q6PCB7 646 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 PPP1R21Q6ZMI0 780 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 CENPUQ71F23 418 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 CRYBG2Q8N1P7 616 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 NCAPGQ9BPX3 1015 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 ACSS3Q9H6R3 686 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 SAYSD1Q9NPB0 183 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 BCLAF3A2AJT9 711 aaKnown RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 CHADO15335 359 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 KCNE1P15382 129 aa11.68□□□□□ -0.54
MSH3-201ENST00000265081 WDR4P57081 412 aaKnown RBP11.68□□□□□ -0.54
MSH3-201ENST00000265081 TAF5Q15542 800 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms