RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ATXN3P54252 364 aaPredicted RBP11.16□□□□□ -0.62
CD44-201ENST00000263398 KIZQ2M2Z5 673 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 DENND1BQ6P3S1 775 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 EIF1ADQ8N9N8 165 aaKnown RBP11.16□□□□□ -0.62
CD44-201ENST00000263398 LRRC40Q9H9A6 602 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 NAALADL1Q9UQQ1 740 aa11.16□□□□□ -0.62
CD44-201ENST00000263398 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 HNRNPCL2B2RXH8 293 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 HNRNPCP07910 306 aaKnown RBP eCLIP11.15□□□□□ -0.62
CD44-201ENST00000263398 HMBSP08397 361 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 THRAP10827 490 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 CALB2P22676 271 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 WDR49Q8IV35 697 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 MCOLN2Q8IZK6 566 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 TAGAPQ8N103 731 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 GPRC5AQ8NFJ5 357 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 SLC5A5Q92911 643 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 VCPIP1Q96JH7 1222 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 CYP3A43Q9HB55 503 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 SCAF8Q9UPN6 1271 aaKnown RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 ZBTB39O15060 712 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 TM9SF1O15321 606 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 RIPK2O43353 540 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 DGKIO75912 1065 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 MAP3K6O95382 1288 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 CYBBP04839 570 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 UBTFL6P0CB48 400 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 GHRP10912 638 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 GYS1P13807 737 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 CNTFP26441 200 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 NUDT2P50583 147 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 KCNK10P57789 538 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 GCNT1Q02742 428 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 TAF1CQ15572 869 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 MAPRE1Q15691 268 aaKnown RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 SAMD7Q7Z3H4 446 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 NT5DC3Q86UY8 548 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 DNAAF5Q86Y56 855 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 SYTL5Q8TDW5 730 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 SGF29Q96ES7 293 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 NUDT12Q9BQG2 462 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 USP18Q9UMW8 372 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 SUFUQ9UMX1 484 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 PKP3Q9Y446 797 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 hCG_2014768A0A024R1R8 64 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 MAGEA13PA6NCF6 341 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 SUPT3HB4E1H0 165 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 PIK3CDO00329 1044 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 DEAF1O75398 565 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 PMPCBO75439 489 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 GRK2P25098 689 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 HSPA13P48723 471 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 PCYT1AP49585 367 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 VCPP55072 806 aaKnown RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 MYL6P60660 151 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 PTPN11Q06124 597 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 ZNF484Q5JVG2 852 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 AGAP9Q5VTM2 703 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 APLFQ8IW19 511 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 ANKRD13AQ8IZ07 590 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 FAM172AQ8WUF8 416 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 ZNF512Q96ME7 567 aaPredicted RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 PARK7Q99497 189 aaKnown RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 CCT7Q99832 543 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 SHCBP1LQ9BZQ2 653 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 WDCPQ9H6R7 721 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 RXFP1Q9HBX9 757 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 CD274Q9NZQ7 290 aa11.15□□□□□ -0.62
CD44-201ENST00000263398 LSM7Q9UK45 103 aaKnown RBP11.15□□□□□ -0.62
CD44-201ENST00000263398 NFIBO00712 420 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 HNRNPRO43390 633 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 SHMT1P34896 483 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 BACE1P56817 501 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ZNF844Q08AG5 666 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 LAYNQ6UX15 382 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ACOT1Q86TX2 421 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 CHSY1Q86X52 802 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 APBB2Q92870 758 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 WNK4Q96J92 1243 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 FAR2Q96K12 515 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 EFCAB1Q9HAE3 211 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 AGO4Q9HCK5 861 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 DDX20Q9UHI6 824 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 PCDHGC5Q9Y5F6 944 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 MAP2K7O14733 419 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ZSCAN9O15535 394 aaPredicted RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 ATXN8OSP0DMR3 200 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ACO1P21399 889 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 SLC26A2P50443 739 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 CLCN3P51790 818 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 GEMP55040 296 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 KRT72Q14CN4 511 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SNX17Q15036 470 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ZC3H12BQ5HYM0 836 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 WLSQ5T9L3 541 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 PTRHD1Q6GMV3 140 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 CYGBQ8WWM9 190 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 CCDC126Q96EE4 140 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 OTUB1Q96FW1 271 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms