RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 DACT2Q5SW24 774 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 NBPF12Q5TAG4 269 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 CWF19L1Q69YN2 538 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 ZPBP2Q6X784 338 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 ADGRF2Q8IZF7 708 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 ACER1Q8TDN7 264 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 CDCA5Q96FF9 252 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 NAT9Q9BTE0 207 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 KLHL25Q9H0H3 589 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 FHOD1Q9Y613 1164 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 SPACA6W5XKT8 324 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 H3BRB1 525 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 NCAM1P13591 858 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 H2AFXP16104 143 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 KLRC1P26715 233 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 MDH1P40925 334 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 NOGQ13253 232 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 CAPRIN1Q14444 709 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 BEND6Q5SZJ8 279 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 THOC7Q6I9Y2 204 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 RIOX2Q8IUF8 465 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 CCNYL1Q8N7R7 359 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 TUT1Q9H6E5 874 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 PPARGC1AQ9UBK2 798 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 C2orf81A6NN90 581 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 CYB561D2O14569 222 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 ZNF263O14978 683 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 GET4Q7L5D6 327 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 OR9Q1Q8NGQ5 310 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 BTBD6Q96KE9 485 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 ROPN1BQ9BZX4 212 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 DCLK3Q9C098 648 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 ASCC2Q9H1I8 757 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 NEUROG2Q9H2A3 272 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 ROPN1Q9HAT0 212 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 RGS7P49802 495 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 MFSD10Q14728 455 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 PGM5Q15124 567 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 PRAMEF18Q5VWM3 479 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 LMBRD2Q68DH5 695 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 SLC20A1Q8WUM9 679 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 GPR63Q9BZJ6 419 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 WDCPQ9H6R7 721 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 DMAP1Q9NPF5 467 aaPredicted RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 TLR8Q9NR97 1041 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 KRT82Q9NSB4 513 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 SNX12Q9UMY4 172 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 HNRNPRO43390 633 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 RAG1P15918 1043 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 GRIK4Q16099 956 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 DPF3Q92784 378 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 PABPC5Q96DU9 382 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 CCT7Q99832 543 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 HTATIP2Q9BUP3 242 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 GOLPH3Q9H4A6 298 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 CAAP1Q9H8G2 361 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 CASS4Q9NQ75 786 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 XPNPEP3Q9NQH7 507 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 RIC8BQ9NVN3 520 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 DRG1Q9Y295 367 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP40-201ENST00000251722 C15orf41Q9Y2V0 281 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 COPG1Q9Y678 874 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 MBL2P11226 248 aaPredicted RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 ALDH5A1P51649 535 aaPredicted RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 DDR1Q08345 913 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 BYSLQ13895 437 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 PTRHD1Q6GMV3 140 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 CPA4Q9UI42 421 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 PCDHB5Q9Y5E4 795 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 A0A087WWV3 80 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 ATP6V1G1O75348 118 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 HAUS5O94927 633 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 FAM107AO95990 144 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 GZMAP12544 262 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 HP1BP3Q5SSJ5 553 aaPredicted RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 CHADLQ6NUI6 762 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 APBB2Q92870 758 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 PRPF18Q99633 342 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 KLHL11Q9NVR0 708 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 TMEM62Q0P6H9 643 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 ITGA9Q13797 1035 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 NR1I3Q14994 352 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 ZCWPW2Q504Y3 356 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 FIGNQ5HY92 759 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 SLC27A1Q6PCB7 646 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 RASGRP2Q7LDG7 609 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 PEX5LQ8IYB4 626 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 TMEM86AQ8N2M4 240 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 TFB1MQ8WVM0 346 aaKnown RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 FTHL17Q9BXU8 183 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 ABI2Q9NYB9 513 aaPredicted RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 FAM50BQ9Y247 325 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 B3GAT3O94766 335 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 NFRKBQ6P4R8 1299 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 RRM2BQ7LG56 351 aa13.24□□□□□ -0.29
USP40-201ENST00000251722 SETD3Q86TU7 594 aaPredicted RBP13.24□□□□□ -0.29
USP40-201ENST00000251722 FBXO16Q8IX29 292 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms