RNA–Protein interactions for RNA: ENST00000248948.3

VPREB3-201, Transcript of V-set pre-B cell surrogate light chain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPREB3, Length 610 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPREB3-201ENST00000248948 SHDQ96IW2 340 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 TWNKQ96RR1 684 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 MED10Q9BTT4 135 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 PLA2G2FQ9BZM2 168 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 CSNK1G1Q9HCP0 422 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 PNPLA8Q9NP80 782 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 CISHQ9NSE2 258 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 TMEM30AQ9NV96 361 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 CA14Q9ULX7 337 aa13.56□□□□□ -0.24
VPREB3-201ENST00000248948 ARNTLO00327 626 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 CLDN5O00501 218 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 DPYSL4O14531 572 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 LRRN2O75325 713 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 AP1G2O75843 785 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 MBD3O95983 291 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 FAM200BP0CF97 657 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 CCDC130P13994 396 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 NPR3P17342 541 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 CD58P19256 250 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 RFX1P22670 979 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 VIPR2P41587 438 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 VCPP55072 806 aaKnown RBP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 STARD6P59095 220 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 PLCB2Q00722 1185 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 GRM2Q14416 872 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 DPCR1Q3MIW9 517 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 ARHGAP29Q52LW3 1261 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 CT47A1Q5JQC4 288 aaPredicted RBP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 RBM43Q6ZSC3 357 aaKnown RBP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 PAQR9Q6ZVX9 377 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 NUP93Q8N1F7 819 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 CELF5Q8N6W0 485 aaKnown RBP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 PDZD8Q8NEN9 1154 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 WHAMMQ8TF30 809 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 RSPRY1Q96DX4 576 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 MSANTD3Q96H12 275 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 SLITRK1Q96PX8 696 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 HNRNPABQ99729 332 aaKnown RBP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 ARID3AQ99856 593 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 DDX23Q9BUQ8 820 aaKnown RBP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 SRRTQ9BXP5 876 aaKnown RBP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 SLC46A2Q9BY10 475 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 BRD9Q9H8M2 597 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 TBC1D17Q9HA65 648 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 FAM49BQ9NUQ9 324 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 COMMD8Q9NX08 183 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPREB3-201ENST00000248948 KIAA1549LQ6ZVL6 1849 aa13.55□□□□□ -0.24
VPREB3-201ENST00000248948 WDFY4Q6ZS81 3184 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 TRAV19A0A0A6YYK7 116 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 FAM92AA1XBS5 289 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 ZNF263O14978 683 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 CHADO15335 359 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 AFPP02771 609 aaKnown RBP13.54□□□□□ -0.24
VPREB3-201ENST00000248948 ERCC5P28715 1186 aaPredicted RBP13.54□□□□□ -0.24
VPREB3-201ENST00000248948 AVPR2P30518 371 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 GDI1P31150 447 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 SLC5A3P53794 718 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 MLLT6P55198 1093 aaPredicted RBP13.54□□□□□ -0.24
VPREB3-201ENST00000248948 USP46P62068 366 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 ORC1Q13415 861 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 TXNDC8Q6A555 127 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 C1orf228Q6PIY5 440 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 YAF2Q8IY57 180 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 TMEM105Q8N8V8 129 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 FLCNQ8NFG4 579 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 GPT2Q8TD30 523 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 BPIFB1Q8TDL5 484 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 CNOT6LQ96LI5 555 aaKnown RBP13.54□□□□□ -0.24
VPREB3-201ENST00000248948 NT5C1BQ96P26 610 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 TRPM5Q9NZQ8 1165 aa13.54□□□□□ -0.24
VPREB3-201ENST00000248948 TNFRSF10BO14763 440 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 OLFM2O95897 454 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 CKMP06732 381 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 USP17L7P0C7H9 530 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 GLULP15104 373 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 TCF3P15923 654 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 TUBP50607 506 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 KCNH2Q12809 1159 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 USP4Q13107 963 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 ARHGAP17Q68EM7 881 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 CLEC20AQ6ZU45 233 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 TPRG1Q6ZUI0 275 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 FAM114A1Q8IWE2 563 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 UBR7Q8N806 425 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 MAB21L3Q8N8X9 362 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 C12orf29Q8N999 325 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 ZMIZ2Q8NF64 920 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 PJA1Q8NG27 643 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 USP13Q92995 863 aaPredicted RBP13.53□□□□□ -0.24
VPREB3-201ENST00000248948 CYFIP2Q96F07 1278 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 TMEM176AQ96HP8 235 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 MED15Q96RN5 788 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 KCNK16Q96T55 309 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 SMOQ99835 787 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 OSBPL6Q9BZF3 934 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 THAP9Q9H5L6 903 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 TRPC7Q9HCX4 862 aa13.53□□□□□ -0.24
VPREB3-201ENST00000248948 TDP1Q9NUW8 608 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms