RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 TATDN2Q93075 761 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 NXPE3Q969Y0 559 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 SMARCD1Q96GM5 515 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 TMEM176AQ96HP8 235 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 SPATA17Q96L03 361 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 INTS2Q9H0H0 1204 aaKnown RBP11.98□□□□□ -0.49
SF3B6-201ENST00000233468 SDCBP2Q9H190 292 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 CRTAC1Q9NQ79 661 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 CISHQ9NSE2 258 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 SAMSN1Q9NSI8 373 aaKnown RBP11.98□□□□□ -0.49
SF3B6-201ENST00000233468 TMLHEQ9NVH6 421 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 GDE1Q9NZC3 331 aa11.98□□□□□ -0.49
SF3B6-201ENST00000233468 SYCE3A1L190 88 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 ATP2C2O75185 946 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 VNN2O95498 520 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 BDNFP23560 247 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 CYP2F1P24903 491 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 CDC25CP30307 473 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 ZNF165P49910 485 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 EPHA5P54756 1037 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 MFAP3P55082 362 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 LRMPQ12912 555 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 ARHGAP15Q53QZ3 475 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 CDKAL1Q5VV42 579 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 C8orf48Q96LL4 319 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 HEXIM2Q96MH2 286 aaKnown RBP11.97□□□□□ -0.49
SF3B6-201ENST00000233468 CRISPLD1Q9H336 500 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 DPEP3Q9H4B8 488 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 FANCLQ9NW38 375 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 CEP72Q9P209 647 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 EPS15L1Q9UBC2 864 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 CDH7Q9ULB5 785 aa11.97□□□□□ -0.49
SF3B6-201ENST00000233468 PDCD11Q14690 1871 aaKnown RBP11.97□□□□□ -0.49
SF3B6-201ENST00000233468 SOBPA7XYQ1 873 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 HCRTO43612 131 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 FAM200BP0CF97 657 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 MYL4P12829 197 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 NPR3P17342 541 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 ATF6P18850 670 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 RFX1P22670 979 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 PPP3CCP48454 512 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 MMRN1Q13201 1228 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 STILQ15468 1287 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 NFKBIBQ15653 356 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 DDR2Q16832 855 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 ZSCAN23Q3MJ62 389 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 HSP90AA4PQ58FG1 418 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 CWF19L1Q69YN2 538 aaKnown RBP11.96□□□□□ -0.49
SF3B6-201ENST00000233468 TRIM65Q6PJ69 517 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 DENND5BQ6ZUT9 1274 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 MTSS1LQ765P7 747 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 AOPEPQ8N6M6 819 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 FLCNQ8NFG4 579 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 LMO3Q8TAP4 145 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 GIPC2Q8TF65 315 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 RSAD2Q8WXG1 361 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 ELMO3Q96BJ8 720 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 CYFIP2Q96F07 1278 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 HNRNPABQ99729 332 aaKnown RBP11.96□□□□□ -0.49
SF3B6-201ENST00000233468 B3GNT5Q9BYG0 378 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 UBE2TQ9NPD8 197 aaPredicted RBP11.96□□□□□ -0.49
SF3B6-201ENST00000233468 DMAP1Q9NPF5 467 aaPredicted RBP11.96□□□□□ -0.49
SF3B6-201ENST00000233468 COMMD8Q9NX08 183 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 IGSF9Q9P2J2 1179 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 APEX2Q9UBZ4 518 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 DAAM1Q9Y4D1 1078 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 PCDHB4Q9Y5E5 795 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 PCDHGA10Q9Y5H3 936 aa11.96□□□□□ -0.49
SF3B6-201ENST00000233468 TRIP11Q15643 1979 aa11.96□□□□□ -0.5
SF3B6-201ENST00000233468 ZNF292O60281 2723 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 SLC38A8A6NNN8 435 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 NARSO43776 548 aaKnown RBP11.95□□□□□ -0.5
SF3B6-201ENST00000233468 LRRN2O75325 713 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 AP1G2O75843 785 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 SOAT2O75908 522 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 NOL4O94818 638 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 RTN3O95197 1032 aaPredicted RBP11.95□□□□□ -0.5
SF3B6-201ENST00000233468 PAEPP09466 180 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 LAMP2P13473 410 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 DDX6P26196 483 aaKnown RBP eCLIP11.95□□□□□ -0.57e-6■□□□□ 9
SF3B6-201ENST00000233468 PDE6CP51160 858 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 FILIP1LQ4L180 1135 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 ZNF394Q53GI3 561 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 TMEM270Q6UE05 265 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 FAM35AQ86V20 835 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 TTC9BQ8N6N2 239 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 ST13P5Q8NFI4 369 aaPredicted RBP11.95□□□□□ -0.5
SF3B6-201ENST00000233468 SLC2A14Q8TDB8 520 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 FGF13Q92913 245 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 E2F7Q96AV8 911 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 TRMT2BQ96GJ1 504 aaKnown RBP11.95□□□□□ -0.5
SF3B6-201ENST00000233468 MYRFLQ96LU7 910 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 LPIN3Q9BQK8 851 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 CRACR2AQ9BSW2 395 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 ADAM33Q9BZ11 813 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 ZNF518BQ9C0D4 1074 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 ATXN3LQ9H3M9 355 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 MFSD1Q9H3U5 465 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 SLITRK6Q9H5Y7 841 aa11.95□□□□□ -0.5
SF3B6-201ENST00000233468 KCNK12Q9HB15 430 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms