RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 GREB1Q4ZG55 1949 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 ANAPC1Q9H1A4 1944 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 A8MXQ7 604 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 C4BPAP04003 597 aaKnown RBP23.6■■□□□ 1.37
VTI1B-201ENST00000216456 USP17L7P0C7H9 530 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 PDIA4P13667 645 aaKnown RBP23.6■■□□□ 1.37
VTI1B-201ENST00000216456 TGM1P22735 817 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 CMA1P23946 247 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 NDUFA8P51970 172 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 CC2D1AQ6P1N0 951 aaPredicted RBP23.6■■□□□ 1.37
VTI1B-201ENST00000216456 C1orf228Q6PIY5 440 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 VSTM1Q6UX27 236 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 DENND5BQ6ZUT9 1274 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 EZH1Q92800 747 aaPredicted RBP23.6■■□□□ 1.37
VTI1B-201ENST00000216456 SPATA17Q96L03 361 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 FAM126AQ9BYI3 521 aaPredicted RBP23.6■■□□□ 1.37
VTI1B-201ENST00000216456 GOLPH3LQ9H4A5 285 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 DUS2Q9NX74 493 aaKnown RBP23.6■■□□□ 1.37
VTI1B-201ENST00000216456 ZMYM5Q9UJ78 669 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 PTPRDP23468 1912 aa23.6■■□□□ 1.37
VTI1B-201ENST00000216456 CEP250Q9BV73 2442 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 CLSTN1O94985 981 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 HDCP19113 662 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 GJA4P35212 333 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 GALK1P51570 392 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 RNF38Q9H0F5 515 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 ECT2Q9H8V3 914 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 GDPD2Q9HCC8 539 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 MAPK8IP1Q9UQF2 711 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 ATG2BQ96BY7 2078 aa23.59■■□□□ 1.37
VTI1B-201ENST00000216456 TRDMT1O14717 391 aaKnown RBP23.58■■□□□ 1.37
VTI1B-201ENST00000216456 NR3C1P04150 777 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 ANXA13P27216 316 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 NRLP54845 237 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 NCOA4Q13772 614 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 KCNB1Q14721 858 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 MAPRE1Q15691 268 aaKnown RBP23.58■■□□□ 1.37
VTI1B-201ENST00000216456 ZNF699Q32M78 642 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 EML3Q32P44 896 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 C1orf220Q5T0J3 134 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 SPOPLQ6IQ16 392 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 B3GALNT2Q8NCR0 500 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 OSCP1Q8WVF1 389 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 KCNK16Q96T55 309 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 SMPD4Q9NXE4 827 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 CGNQ9P2M7 1197 aaKnown RBP23.58■■□□□ 1.37
VTI1B-201ENST00000216456 HMGXB4Q9UGU5 601 aa23.58■■□□□ 1.37
VTI1B-201ENST00000216456 ZNF840PA6NDX5 716 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 SOBPA7XYQ1 873 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 RNF40O75150 1001 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 STAU1O95793 577 aaKnown RBP23.57■■□□□ 1.36
VTI1B-201ENST00000216456 ABL1P00519 1130 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 RPN1P04843 607 aaKnown RBP23.57■■□□□ 1.36
VTI1B-201ENST00000216456 TAF10Q12962 218 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 PPP2R5DQ14738 602 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 PDGFRLQ15198 375 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 RSPO4Q2I0M5 234 aaPredicted RBP23.57■■□□□ 1.36
VTI1B-201ENST00000216456 PAQR9Q6ZVX9 377 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 FSIP1Q8NA03 581 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 SYAP1Q96A49 352 aaPredicted RBP23.57■■□□□ 1.36
VTI1B-201ENST00000216456 C8orf48Q96LL4 319 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 TTLL2Q9BWV7 592 aa23.57■■□□□ 1.36
VTI1B-201ENST00000216456 TRIM66O15016 1216 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 PAPSS2O95340 614 aaPredicted RBP23.56■■□□□ 1.36
VTI1B-201ENST00000216456 ATICP31939 592 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 SYKP43405 635 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 IFNAR2P48551 515 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 CLDN10P78369 228 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 KRT85P78386 507 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 SPEM2Q0P670 501 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 GRSF1Q12849 480 aaKnown RBP eCLIP23.56■■□□□ 1.36
VTI1B-201ENST00000216456 SIM2Q14190 667 aaPredicted RBP23.56■■□□□ 1.36
VTI1B-201ENST00000216456 CEP135Q66GS9 1140 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 TRPM5Q9NZQ8 1165 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 ARHGAP26Q9UNA1 814 aa23.56■■□□□ 1.36
VTI1B-201ENST00000216456 LEFTY2O00292 366 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 PSMD2Q13200 908 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 ZNF667Q5HYK9 610 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 ACOT1Q86TX2 421 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 LONP2Q86WA8 852 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 SLC9A9Q8IVB4 645 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 SCAMP5Q8TAC9 235 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 GOLGA5Q8TBA6 731 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 P2RY13Q9BPV8 354 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 USP18Q9UMW8 372 aa23.55■■□□□ 1.36
VTI1B-201ENST00000216456 MED19A0JLT2 244 aaPredicted RBP23.54■■□□□ 1.36
VTI1B-201ENST00000216456 PDXKO00764 312 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 CCDC130P13994 396 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 NOP14P78316 857 aaKnown RBP23.54■■□□□ 1.36
VTI1B-201ENST00000216456 GAB4Q2WGN9 574 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 FAM35AQ86V20 835 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 SYNPOQ8N3V7 929 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 CPA6Q8N4T0 437 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 ELOVL4Q9GZR5 314 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 VRTNQ9H8Y1 702 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 CPQQ9Y646 472 aa23.54■■□□□ 1.36
VTI1B-201ENST00000216456 FAM237AA0A1B0GTK4 181 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 BEST1O76090 585 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 FAM163BP0C2L3 166 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 TRIM49P0CI25 452 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms