RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASM4	YDL088C	YLR194C	Q05777	254 aa		0.9	□□□□□ -2.27
ASM4	YDL088C	YOR072W	Q08486	104 aa		0.9	□□□□□ -2.27
ASM4	YDL088C	PRM3	Q08931	133 aa		0.9	□□□□□ -2.27
ASM4	YDL088C	OST5	Q92316	86 aa		0.9	□□□□□ -2.27
ASM4	YDL088C	EMP24	P32803	203 aa	Known RBP	0.89	□□□□□ -2.27
ASM4	YDL088C	SRX1	P36077	127 aa		0.89	□□□□□ -2.27
ASM4	YDL088C	YAR064W	P39563	99 aa		0.89	□□□□□ -2.27
ASM4	YDL088C	YIL102C	P40488	101 aa		0.89	□□□□□ -2.27
ASM4	YDL088C	YGR164W	P53291	111 aa		0.89	□□□□□ -2.27
ASM4	YDL088C	YMR007W	Q03675	126 aa		0.89	□□□□□ -2.27
ASM4	YDL088C	YMR090W	Q04304	227 aa	Known RBP	0.89	□□□□□ -2.27
ASM4	YDL088C	COA4	Q05809	96 aa		0.89	□□□□□ -2.27
ASM4	YDL088C	SWC7	Q06707	132 aa		0.89	□□□□□ -2.27
ASM4	YDL088C	ACC1	Q00955	2233 aa	Known RBP	0.89	□□□□□ -2.27
ASM4	YDL088C	PDR11	P40550	1411 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	BUD4	P47136	1447 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	YBR090C	P38253	122 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	YEA6	P39953	335 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	YJL009W	P47078	108 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	PAU12	P53343	120 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	RPL22B	P56628	122 aa	Known RBP	0.88	□□□□□ -2.27
ASM4	YDL088C	YIL014C-A	Q02598	104 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	CCW12	Q12127	133 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	COA6	Q3E846	104 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	ENV10	Q99382	181 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	CYR1	P08678	2026 aa	Known RBP	0.88	□□□□□ -2.27
ASM4	YDL088C	DNA2	P38859	1522 aa		0.88	□□□□□ -2.27
ASM4	YDL088C	TOP2	P06786	1428 aa	Known RBP	0.88	□□□□□ -2.27
ASM4	YDL088C	RPL22A	P05749	121 aa	Known RBP	0.87	□□□□□ -2.27
ASM4	YDL088C	RPS22A	P0C0W1	130 aa	Known RBP	0.87	□□□□□ -2.27
ASM4	YDL088C	YJL197C-A	P0C5P0	93 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	SRB6	P32570	121 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	AIM4	P38305	123 aa	Predicted RBP	0.87	□□□□□ -2.27
ASM4	YDL088C	CYB5	P40312	120 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	YIL163C	P40448	117 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	HUR1	P45820	110 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	YMR103C	Q04436	120 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	YLR363W-A	Q3E747	85 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.87	□□□□□ -2.27
ASM4	YDL088C	KRE5	P22023	1365 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	SKI3	P17883	1432 aa	Known RBP	0.87	□□□□□ -2.27
ASM4	YDL088C	YSF3	P0C074	85 aa	Predicted RBP	0.87	□□□□□ -2.27
ASM4	YDL088C	YOL013W-A	P0C272	63 aa	Predicted RBP	0.87	□□□□□ -2.27
ASM4	YDL088C	PAU19	P0CE85	124 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	YCR101C	P25607	182 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	PAU3	P25610	124 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	LCL2	Q08045	131 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	YGL041C-B	Q3E750	60 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	YOS1	Q3E834	85 aa		0.87	□□□□□ -2.27
ASM4	YDL088C	LYS2	P07702	1392 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	CAT8	P39113	1433 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	UBR2	Q07963	1872 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	HMRA2	P0CY13	119 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	UBC5	P15732	148 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	YCR001W	P25347	104 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	BUD23	P25627	275 aa	Predicted RBP	0.86	□□□□□ -2.27
ASM4	YDL088C	PAU24	P38155	120 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	YBR013C	P38215	129 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	COX23	P38824	151 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	POR2	P40478	281 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	MIC27	P50945	234 aa		0.86	□□□□□ -2.27
ASM4	YDL088C	YNL122C	P53921	115 aa	Predicted RBP	0.86	□□□□□ -2.27
ASM4	YDL088C	GEA1	P47102	1408 aa	Predicted RBP	0.85	□□□□□ -2.27
ASM4	YDL088C	GEA2	P39993	1459 aa	Known RBP	0.85	□□□□□ -2.27
ASM4	YDL088C	REV3	P14284	1504 aa		0.85	□□□□□ -2.27
ASM4	YDL088C	PAU2	P32612	120 aa		0.85	□□□□□ -2.27
ASM4	YDL088C	YHR138C	P38841	114 aa	Predicted RBP	0.85	□□□□□ -2.27
ASM4	YDL088C	MVB12	P42939	101 aa		0.85	□□□□□ -2.27
ASM4	YDL088C	YLR285C-A	Q3E771	56 aa		0.85	□□□□□ -2.27
ASM4	YDL088C	YGR240C-A	Q3E786	66 aa		0.85	□□□□□ -2.27
ASM4	YDL088C	TY1B-H	O13535	1793 aa		0.85	□□□□□ -2.27
ASM4	YDL088C	YPK9	Q12697	1472 aa		0.85	□□□□□ -2.27
ASM4	YDL088C	CDC39	P25655	2108 aa	Known RBP	0.85	□□□□□ -2.27
ASM4	YDL088C	UBC4	P15731	148 aa		0.84	□□□□□ -2.27
ASM4	YDL088C	YMR321C	Q04898	105 aa		0.84	□□□□□ -2.27
ASM4	YDL088C	YOR289W	Q12012	251 aa	Predicted RBP	0.84	□□□□□ -2.27
ASM4	YDL088C	ROM2	P51862	1356 aa	Known RBP	0.84	□□□□□ -2.27
ASM4	YDL088C	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.84	□□□□□ -2.28
ASM4	YDL088C	MRPL31	P14063	131 aa	Predicted RBP	0.83	□□□□□ -2.28
ASM4	YDL088C	PAU16	P35994	123 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	YIR020C	P40575	100 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	PAU15	P40585	124 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	ICS3	P47034	131 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	MGR2	Q02889	113 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	LSM6	Q06406	86 aa	Known RBP	0.83	□□□□□ -2.28
ASM4	YDL088C	FIT3	Q08907	204 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	YHR213W-B	Q8TGK1	99 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	MIC10	Q96VH5	97 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	YLR419W	Q06698	1435 aa	Known RBP	0.83	□□□□□ -2.28
ASM4	YDL088C	RSF2	P46974	1380 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	VPS55	P47111	140 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	MIX14	Q04341	121 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	YCL048W-A	Q2V2Q2	79 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	HUG1	Q6Q5K6	68 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	YCL001W-B	Q96VH2	84 aa		0.83	□□□□□ -2.28
ASM4	YDL088C	HUA1	P40325	198 aa		0.82	□□□□□ -2.28
ASM4	YDL088C	EMC5	P40540	141 aa		0.82	□□□□□ -2.28
ASM4	YDL088C	MSL1	P40567	111 aa	Predicted RBP	0.82	□□□□□ -2.28
ASM4	YDL088C	RSM19	P53733	91 aa	Predicted RBP	0.82	□□□□□ -2.28
ASM4	YDL088C	YOL118C	Q08259	102 aa		0.82	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 38.4 ms