RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CACNA2D1P54289 1103 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 SNRPFP62306 86 aaKnown RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 DMWDQ09019 674 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 IFRD2Q12894 506 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 ORC1Q13415 861 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 ITPRIPL2Q3MIP1 535 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 CFAP221Q4G0U5 840 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 NAIF1Q69YI7 327 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 CC2D1AQ6P1N0 951 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 C4orf50Q6ZRC1 276 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 DPH6Q7L8W6 267 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 RALGPS2Q86X27 583 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 ARL14EPQ8N8R7 260 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 SUMF1Q8NBK3 374 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 ZNF518BQ9C0D4 1074 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 XYLT2Q9H1B5 865 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 CHRDQ9H2X0 955 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 KCTD10Q9H3F6 313 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 GOLPH3LQ9H4A5 285 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 C8orf33Q9H7E9 229 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 HPS4Q9NQG7 708 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 TMEM30AQ9NV96 361 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 POLR3BQ9NW08 1133 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 ZSCAN32Q9NX65 697 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 DMXL1Q9Y485 3027 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 RIF1Q5UIP0 2472 aaKnown RBP10.98□□□□□ -0.65
SCN1A-222ENST00000642141 TRAV19A0A0A6YYK7 116 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 F8VP50 259 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 ANXA13P27216 316 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 MAGEA9P43362 315 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 CXCL12P48061 93 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 PSMD2Q13200 908 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 SRSF5Q13243 272 aaKnown RBP10.98□□□□□ -0.65
SCN1A-222ENST00000642141 RUNX3Q13761 415 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 NCOA4Q13772 614 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 ZNF699Q32M78 642 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 ZNF528Q3MIS6 628 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 C12orf56Q8IXR9 622 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 GOLGA5Q8TBA6 731 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 MYCBPAPQ8TBZ2 947 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 PARD3BQ8TEW8 1205 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 EEF2KMTQ96G04 330 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 FUBP3Q96I24 572 aaKnown RBP eCLIP10.98□□□□□ -0.65
SCN1A-222ENST00000642141 MYRFLQ96LU7 910 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 FAM83CQ9BQN1 747 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 MED10Q9BTT4 135 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 B3GNT5Q9BYG0 378 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 LINC00597Q9H2U6 94 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 SEMA4AQ9H3S1 761 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 FBRSL1Q9HCM7 1045 aaKnown RBP10.98□□□□□ -0.65
SCN1A-222ENST00000642141 PRMT8Q9NR22 394 aaPredicted RBP10.98□□□□□ -0.65
SCN1A-222ENST00000642141 DMAC2Q9NW81 257 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 OBP2AQ9NY56 170 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 CGNQ9P2M7 1197 aaKnown RBP10.98□□□□□ -0.65
SCN1A-222ENST00000642141 UXTQ9UBK9 157 aaPredicted RBP10.98□□□□□ -0.65
SCN1A-222ENST00000642141 HPSEQ9Y251 543 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 PCDHGA2Q9Y5H1 932 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 WNT6Q9Y6F9 365 aa10.98□□□□□ -0.65
SCN1A-222ENST00000642141 CHURC1-FNTBB4DL54 471 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 TACC1O75410 805 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 VNN1O95497 513 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 C4BPAP04003 597 aaKnown RBP10.97□□□□□ -0.65
SCN1A-222ENST00000642141 USP17L7P0C7H9 530 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 HDCP19113 662 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 DDX6P26196 483 aaKnown RBP eCLIP10.97□□□□□ -0.65
SCN1A-222ENST00000642141 WEE1P30291 646 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 MAGEA11P43364 429 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 PXNP49023 591 aaPredicted RBP10.97□□□□□ -0.65
SCN1A-222ENST00000642141 FNTBP49356 437 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 PLCB2Q00722 1185 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 LRRC32Q14392 662 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 MAPRE1Q15691 268 aaKnown RBP10.97□□□□□ -0.65
SCN1A-222ENST00000642141 SPOPLQ6IQ16 392 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 PKN3Q6P5Z2 889 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 DENND5BQ6ZUT9 1274 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 B3GALNT2Q8NCR0 500 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 SPATA18Q8TC71 538 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 SH3RF2Q8TEC5 729 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 RUBCNQ92622 972 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 SYAP1Q96A49 352 aaPredicted RBP10.97□□□□□ -0.65
SCN1A-222ENST00000642141 CHFRQ96EP1 664 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 TRMT2BQ96GJ1 504 aaKnown RBP10.97□□□□□ -0.65
SCN1A-222ENST00000642141 KCNK16Q96T55 309 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 SDCBP2Q9H190 292 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 MMRN2Q9H8L6 949 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 DUS2Q9NX74 493 aaKnown RBP10.97□□□□□ -0.65
SCN1A-222ENST00000642141 SMPD4Q9NXE4 827 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 NCDNQ9UBB6 729 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 USP25Q9UHP3 1055 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 COL4A2P08572 1712 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 F5P12259 2224 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 ZNF292O60281 2723 aa10.97□□□□□ -0.65
SCN1A-222ENST00000642141 PDXKO00764 312 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 ZNF202O95125 648 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 EGFP01133 1207 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 TRIM49P0CI25 452 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 TRIM49CP0CI26 452 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 TDGF1P13385 188 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 ATICP31939 592 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 GALK1P51570 392 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms