RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TMEM114B3SHH9 223 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF862O60290 1169 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TM7SF2O76062 418 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ASLP04424 464 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 C7P10643 843 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PSMA2P25787 234 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 AQP5P55064 265 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CSNK2BP67870 215 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 SDE2Q6IQ49 451 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 HEATR4Q86WZ0 1026 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 RHPN2Q8IUC4 686 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 MAPKAPK5Q8IW41 473 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 RNF34Q969K3 372 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 DDX3XO00571 662 aaKnown RBP eCLIP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 EDF1O60869 148 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TCEA3O75764 348 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 HOXC9P31274 260 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 MECOMQ03112 1051 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CALN1Q9BXU9 219 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 LGALS13Q9UHV8 139 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 RAD54BQ9Y620 910 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 JCADQ9P266 1359 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 LOC110117498-PIK3R3F6TDL0 507 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 SNX2O60749 519 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CCNB1P14635 433 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 VCLP18206 1134 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 GTF2H1P32780 548 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 GABPAQ06546 454 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 MAPK6Q16659 721 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 SLC22A9Q8IVM8 553 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CCDC60Q8IWA6 550 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 SLC35G2Q8TBE7 412 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PIK3R3Q92569 461 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 APOL6Q9BWW8 343 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 DPPA5A6NC42 116 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 APOL1O14791 398 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 HNRNPDLO14979 420 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 DNAJA2O60884 412 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 MPOP05164 745 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 POLBP06746 335 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 EPHB2P29323 1055 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 NUDT2P50583 147 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 KCNK10P57789 538 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PLOD1Q02809 727 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 DRAP1Q14919 205 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ABCB5Q2M3G0 1257 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ELMSAN1Q6PJG2 1045 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CMTR1Q8N1G2 835 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 METTL13Q8N6R0 699 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 DEPTORQ8TB45 409 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 MDM1Q8TC05 714 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TBCKQ8TEA7 893 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CAPSLQ8WWF8 208 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PHF20Q9BVI0 1012 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CDCA7Q9BWT1 371 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 DHX36Q9H2U1 1008 aaKnown RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 GTSE1Q9NYZ3 720 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PSMD13Q9UNM6 376 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 SNX13Q9Y5W8 968 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CDC42BPGQ6DT37 1551 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 CDC42BPAQ5VT25 1732 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 FAM172BPA6NC97 362 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 GLI1P08151 1106 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 NPR1P16066 1061 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PRKCIP41743 596 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ERVK-24P63145 666 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TMTC4Q5T4D3 741 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 PIGWQ7Z7B1 504 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 NDUFAF2Q8N183 169 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF75CPQ92670 426 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-220ENST00000641603 TLR10Q9BXR5 811 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 ADAM28Q9UKQ2 775 aa4.84□□□□□ -1.63
SCN1A-220ENST00000641603 GSAPA4D1B5 854 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC154A6NI56 674 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 PRPF4O43172 522 aaKnown RBP eCLIP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 CSDE1O75534 798 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 FOSL1P15407 271 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 QPRTQ15274 297 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 HEATR6Q6AI08 1181 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 MZT2AQ6P582 158 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC8DQ7L1W4 858 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 OR2W6PQ8NHA6 318 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 TBC1D16Q8TBP0 767 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 TLCD1Q96CP7 247 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 PTCD3Q96EY7 689 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 SLC9A2Q9UBY0 812 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF180Q9UJW8 692 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 PCDHGA3Q9Y5H0 932 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 ERVV-2B6SEH9 535 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 BACH1O14867 736 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 SARSP49591 514 aaKnown RBP4.84□□□□□ -1.64
SCN1A-220ENST00000641603 BCAR1P56945 870 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 SEL1L3Q68CR1 1132 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 FAAH2Q6GMR7 532 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 DENND5AQ6IQ26 1287 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 ERAP2Q6P179 960 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 LINC00523Q86TU6 105 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 C12orf56Q8IXR9 622 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 OSCARQ8IYS5 282 aa4.84□□□□□ -1.64
SCN1A-220ENST00000641603 PQLC1Q8N2U9 271 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms