RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TMEM206Q9H813 350 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 MRPL44Q9H9J2 332 aaKnown RBP16.11■□□□□ 0.17
SYNE2-228ENST00000639659 TMEM9BQ9NQ34 198 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 ZMIZ1Q9ULJ6 1067 aa16.11■□□□□ 0.17
SYNE2-228ENST00000639659 ABCA7Q8IZY2 2146 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 ANTXRLA6NF34 631 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 SLC26A4O43511 780 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 NFATC1O95644 943 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 TOP3BO95985 862 aaKnown RBP16.1■□□□□ 0.17
SYNE2-228ENST00000639659 PSMC1P62191 440 aaKnown RBP16.1■□□□□ 0.17
SYNE2-228ENST00000639659 POSTNQ15063 836 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 PMS2CLQ68D20 193 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 SCARA3Q6AZY7 606 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 KIAA1211LQ6NV74 962 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 SYCP3Q8IZU3 236 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 C1orf127Q8N9H9 656 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 LEO1Q8WVC0 666 aaPredicted RBP16.1■□□□□ 0.17
SYNE2-228ENST00000639659 ACBD6Q9BR61 282 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 ABCB6Q9NP58 842 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 RBAKQ9NYW8 714 aaPredicted RBP16.1■□□□□ 0.17
SYNE2-228ENST00000639659 EBF1Q9UH73 591 aa16.1■□□□□ 0.17
SYNE2-228ENST00000639659 R3HCC1Q9Y3T6 440 aaKnown RBP16.1■□□□□ 0.17
SYNE2-228ENST00000639659 HELZP42694 1942 aaKnown RBP16.09■□□□□ 0.17
SYNE2-228ENST00000639659 GCNT3O95395 438 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 ABL1P00519 1130 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 TMEM191BP0C7N4 346 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 HDCP19113 662 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 ADSSP30520 456 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 LONP1P36776 959 aaKnown RBP16.09■□□□□ 0.17
SYNE2-228ENST00000639659 MAPK8P45983 427 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 KCNA1Q09470 495 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 LMBRD2Q68DH5 695 aaPredicted RBP16.09■□□□□ 0.17
SYNE2-228ENST00000639659 NT5DC4Q86YG4 428 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 BRSK2Q8IWQ3 736 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 CACTINQ8WUQ7 758 aaKnown RBP16.09■□□□□ 0.17
SYNE2-228ENST00000639659 TRMT2BQ96GJ1 504 aaKnown RBP16.09■□□□□ 0.17
SYNE2-228ENST00000639659 MTMR12Q9C0I1 747 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 PCIF1Q9H4Z3 704 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 BCCIPQ9P287 314 aaKnown RBP eCLIP16.09■□□□□ 0.17
SYNE2-228ENST00000639659 EXOC7Q9UPT5 735 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 STYXL1Q9Y6J8 313 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 ANAPC1Q9H1A4 1944 aa16.09■□□□□ 0.17
SYNE2-228ENST00000639659 SOBPA7XYQ1 873 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 MAP3K13O43283 966 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ATP2C2O75185 946 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ANXA13P27216 316 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 PCSK1P29120 753 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 GRIK1P39086 918 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 CYP27A1Q02318 531 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 IFRD2Q12894 506 aaPredicted RBP16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ZNF720Q7Z2F6 126 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 C11orf74Q86VG3 221 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 TMEM86AQ8N2M4 240 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 DEFB124Q8NES8 71 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 MDGA1Q8NFP4 955 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 CCDC26Q8TAB7 109 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 USP33Q8TEY7 942 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 RLN3Q8WXF3 142 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 MYLPFQ96A32 169 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 HVCN1Q96D96 273 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ACCSQ96QU6 501 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 SYT15Q9BQS2 421 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ADAM33Q9BZ11 813 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ST6GALNAC4Q9H4F1 302 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 SMPD4Q9NXE4 827 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 SMC3Q9UQE7 1217 aa16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ATXN2Q99700 1313 aaKnown RBP16.08■□□□□ 0.16
SYNE2-228ENST00000639659 ALDH1A2O94788 518 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 IDEP14735 1019 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 BDNFP23560 247 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 TIE1P35590 1138 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 OPRD1P41143 372 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 LHX1P48742 406 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 IRX4P78413 519 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 RBP5P82980 135 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 KDSRQ06136 332 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 SF3A1Q15459 793 aaKnown RBP16.07■□□□□ 0.16
SYNE2-228ENST00000639659 C4orf50Q6ZRC1 276 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 PGBD3Q8N328 593 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 LRRC52Q8N7C0 313 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 EPSTI1Q96J88 318 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 TMX3Q96JJ7 454 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 MYRFLQ96LU7 910 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 PKMYT1Q99640 499 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 PDE11AQ9HCR9 933 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 ZDHHC4Q9NPG8 344 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 TRPM5Q9NZQ8 1165 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 GCNT4Q9P109 453 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 MAGEC2Q9UBF1 373 aaPredicted RBP16.07■□□□□ 0.16
SYNE2-228ENST00000639659 ITGA11Q9UKX5 1188 aa16.07■□□□□ 0.16
SYNE2-228ENST00000639659 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 K7EQS6 105 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 LEFTY2O00292 366 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 KLF8O95600 359 aaPredicted RBP16.06■□□□□ 0.16
SYNE2-228ENST00000639659 BMP15O95972 392 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 PDGFRBP09619 1106 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 CFAP221Q4G0U5 840 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 TRIM61Q5EBN2 209 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 L1TD1Q5T7N2 865 aaKnown RBP16.06■□□□□ 0.16
SYNE2-228ENST00000639659 USP49Q70CQ1 688 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms