RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 HIST3H2AQ7L7L0 130 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 TRMT11Q7Z4G4 463 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SLC25A41Q8N5S1 370 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 HIST1H2ACQ93077 130 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PRMT6Q96LA8 375 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 KCNN2Q9H2S1 579 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 TEX33O43247 280 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 OR6A2O95222 327 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CYP2C8P10632 490 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SGO1Q5FBB7 561 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 KLHL24Q6TFL4 600 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ZC3H18Q86VM9 953 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ADGRF2Q8IZF7 708 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MYO1HQ8N1T3 1032 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CENPSQ8N2Z9 138 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CELF1Q92879 486 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MED8Q96G25 268 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 DCP1AQ9NPI6 582 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 C20orf96Q9NUD7 363 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 INTS7Q9NVH2 962 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 TUBGCP4Q9UGJ1 667 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 RIC1Q4ADV7 1423 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 STK36Q9NRP7 1315 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 C1QTNF3-AMACRE9PGA6 284 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 FBXO21O94952 628 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 WDR47O94967 919 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PARNO95453 639 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MYL2P10916 166 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ITGALP20701 1170 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SERPINB4P48594 390 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 BACE1P56817 501 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 DGKZQ13574 1117 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 PRAMEF18Q5VWM3 479 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 TAF2Q6P1X5 1199 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 C16orf87Q6PH81 154 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 FRMD5Q7Z6J6 570 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 SUGP1Q8IWZ8 645 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CATSPER1Q8NEC5 780 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 IPMKQ8NFU5 416 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 ARHGEF26Q96DR7 871 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MRPL1Q9BYD6 325 aaKnown RBP6.37□□□□□ -1.39
SCN1A-217ENST00000637988 BCL2L14Q9BZR8 327 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 MAN1B1Q9UKM7 699 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 LZTS1Q9Y250 596 aa6.37□□□□□ -1.39
SCN1A-217ENST00000637988 CCDC195A0A1B0GUA6 201 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CYP27B1O15528 508 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RTN2O75298 545 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 APOA1P02647 267 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ADH1AP07327 375 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CYP2A7P20853 494 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 SNCBQ16143 134 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 SMYD4Q8IYR2 804 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CXorf40AQ8TE69 158 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 USP7Q93009 1102 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF512BQ96KM6 892 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RNPC3Q96LT9 517 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 IDI2Q9BXS1 227 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 TRIM8Q9BZR9 551 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 SMYD3Q9H7B4 428 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RMND5AQ9H871 391 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 KLHL28Q9NXS3 571 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 EIF3LQ9Y262 564 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CAB39Q9Y376 341 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ZC3H13Q5T200 1668 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 KIF20BQ96Q89 1820 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PDZK1P1A8MUH7 402 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 H0YC42 278 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 NR3C2P08235 984 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ITGB6P18564 788 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RHOAP61586 193 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RBL2Q08999 1139 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 STX5Q13190 355 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 NNTQ13423 1086 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 NFRKBQ6P4R8 1299 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 SAMD3Q8N6K7 520 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 OTUD7AQ8TE49 926 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 FAR1Q8WVX9 515 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF558Q96NG5 402 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 HEMGNQ9BXL5 484 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 LSG1Q9H089 658 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 BCL2L12Q9HB09 334 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 POLE3Q9NRF9 147 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RNF112Q9ULX5 631 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 TDRKHQ9Y2W6 561 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 MRPS23Q9Y3D9 190 aaKnown RBP6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CXCL11O14625 94 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 GYG2O15488 501 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 F9P00740 461 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PDGFRAP16234 1089 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 RGS7P49802 495 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 HNMTP50135 292 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PPIGQ13427 754 aaKnown RBP eCLIP6.36□□□□□ -1.398e-7■■■□□ 15.7
SCN1A-217ENST00000637988 ITGA9Q13797 1035 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PROSER3Q2NL68 480 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CYFIP2Q96F07 1278 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 PAGE5Q96GU1 130 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 CRELD1Q96HD1 420 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 SERPINB12Q96P63 405 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 BBS4Q96RK4 519 aa6.36□□□□□ -1.39
SCN1A-217ENST00000637988 C17orf75Q9HAS0 396 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms