RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GOLGA8JA6NMD2 632 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 NR1H3Q13133 447 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 LRRC52Q8N7C0 313 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 FSIP1Q8NA03 581 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 TSTD1Q8NFU3 115 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 ACCSQ96QU6 501 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 TPSD1Q9BZJ3 242 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 GCNT4Q9P109 453 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 ABCA7Q8IZY2 2146 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 GIPC1O14908 333 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 GCNT3O95395 438 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 CD2BP2O95400 341 aaKnown RBP20.8■□□□□ 0.92
CLN3-262ENST00000637699 HDCP19113 662 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 SEC13P55735 322 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 KCNB1Q14721 858 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 CFAP221Q4G0U5 840 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 C2orf27AQ580R0 203 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 L1TD1Q5T7N2 865 aaKnown RBP20.8■□□□□ 0.92
CLN3-262ENST00000637699 ADGRF2Q8IZF7 708 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 CXorf38Q8TB03 319 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 GDAP2Q9NXN4 497 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 SEL1LQ9UBV2 794 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 RALYQ9UKM9 306 aaKnown RBP20.8■□□□□ 0.92
CLN3-262ENST00000637699 ITGA11Q9UKX5 1188 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 CACNA1GO43497 2377 aa20.8■□□□□ 0.92
CLN3-262ENST00000637699 MYMKA6NI61 221 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 ATP2C2O75185 946 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 LDHAP00338 332 aaKnown RBP20.79■□□□□ 0.92
CLN3-262ENST00000637699 PCSK1P29120 753 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 LHX1P48742 406 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 NOVA1P51513 510 aaKnown RBP20.79■□□□□ 0.92
CLN3-262ENST00000637699 RBP5P82980 135 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 USP39Q53GS9 565 aaKnown RBP20.79■□□□□ 0.92
CLN3-262ENST00000637699 BRAPQ7Z569 592 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 SYCP3Q8IZU3 236 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 TOP6BLQ8N6T0 577 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 PCIF1Q9H4Z3 704 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 PDE11AQ9HCR9 933 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 MYO16Q9Y6X6 1858 aa20.79■□□□□ 0.92
CLN3-262ENST00000637699 LNP1A1A4G5 178 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 ANTXRLA6NF34 631 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 GABRDO14764 452 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 GAP43P17677 238 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 CASP5P51878 434 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 SOWAHAQ2M3V2 549 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 DAB2IPQ5VWQ8 1189 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 ANO7Q6IWH7 933 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 TTC30AQ86WT1 665 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 USP33Q8TEY7 942 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 DNAJC19Q96DA6 116 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 FUBP3Q96I24 572 aaKnown RBP eCLIP20.78■□□□□ 0.92
CLN3-262ENST00000637699 CBWD1Q9BRT8 395 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 MTMR12Q9C0I1 747 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 STK17AQ9UEE5 414 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 CCDC39Q9UFE4 941 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 SIX4Q9UIU6 781 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 ARHGAP26Q9UNA1 814 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 ANAPC1Q9H1A4 1944 aa20.78■□□□□ 0.92
CLN3-262ENST00000637699 K7EQS6 105 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 NFATC1O95644 943 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 PROS1P07225 676 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 TMEM191BP0C7N4 346 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 GARTP22102 1010 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 PSMC1P62191 440 aaKnown RBP20.77■□□□□ 0.92
CLN3-262ENST00000637699 RRAGBQ5VZM2 374 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 PMS2CLQ68D20 193 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 LMBRD2Q68DH5 695 aaPredicted RBP20.77■□□□□ 0.92
CLN3-262ENST00000637699 FAM171BQ6P995 826 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 SV2BQ7L1I2 683 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 CCDC33Q8N5R6 958 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 CCDC26Q8TAB7 109 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 SPATA18Q8TC71 538 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 MAGEC2Q9UBF1 373 aaPredicted RBP20.77■□□□□ 0.92
CLN3-262ENST00000637699 R3HCC1Q9Y3T6 440 aaKnown RBP20.77■□□□□ 0.92
CLN3-262ENST00000637699 PCDHB13Q9Y5F0 798 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 CLIC4Q9Y696 253 aa20.77■□□□□ 0.92
CLN3-262ENST00000637699 KIAA1549LQ6ZVL6 1849 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 THADAQ6YHU6 1953 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 C1QTNF9BB2RNN3 333 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 KHNYNO15037 678 aaKnown RBP20.76■□□□□ 0.91
CLN3-262ENST00000637699 C1QTNF9P0C862 333 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 IDEP14735 1019 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 BCKDHBP21953 392 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 BDNFP23560 247 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 LMO2P25791 158 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 GRIK1P39086 918 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 OPRD1P41143 372 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 MAGEA11P43364 429 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 ZXDBP98169 803 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 FOXC1Q12948 553 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 SH3PXD2AQ5TCZ1 1133 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 C4orf50Q6ZRC1 276 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 MYLPFQ96A32 169 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 SYT15Q9BQS2 421 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 NUP205Q92621 2012 aa20.76■□□□□ 0.91
CLN3-262ENST00000637699 PATE3B3GLJ2 98 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 LEFTY2O00292 366 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 PDGFRBP09619 1106 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 TCF3P15923 654 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 DHPSP49366 369 aaPredicted RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms