RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 COMTP21964 271 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 BCAR1P56945 870 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 PPIGQ13427 754 aaKnown RBP eCLIP19.44■□□□□ 0.76e-7■□□□□ 10.9
CLN3-254ENST00000637050 C16orf59Q7L2K0 433 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 OR10T2Q8NGX3 314 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 PCED1BQ96HM7 432 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 SIGLEC16A6NMB1 481 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 XPO1O14980 1071 aaKnown RBP19.43■□□□□ 0.7
CLN3-254ENST00000637050 GABBR2O75899 941 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 PLA2G4AP47712 749 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 RGS7P49802 495 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 SNX16P57768 344 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 RPL7AP62424 266 aaKnown RBP19.43■□□□□ 0.7
CLN3-254ENST00000637050 PTPROQ16827 1216 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 MYRIPQ8NFW9 859 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 SELENOOQ9BVL4 669 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 GPR62Q9BZJ7 368 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 LCMT1Q9UIC8 334 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 GOLGA8SH3BPF8 625 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 PROSCO94903 275 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 SLU7O95391 586 aaKnown RBP19.43■□□□□ 0.7
CLN3-254ENST00000637050 NPR3P17342 541 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 FGFR3P22607 806 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 TERF1P54274 439 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 ELAVL2Q12926 359 aaKnown RBP19.43■□□□□ 0.7
CLN3-254ENST00000637050 FUT10Q6P4F1 479 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 FAM35AQ86V20 835 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 COG1Q8WTW3 980 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 BADQ92934 168 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 CD101Q93033 1021 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 HSFY1Q96LI6 401 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 MCEEQ96PE7 176 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 MED10Q9BTT4 135 aa19.43■□□□□ 0.7
CLN3-254ENST00000637050 SF3B1O75533 1304 aaKnown RBP eCLIP19.43■□□□□ 0.7
CLN3-254ENST00000637050 MIF4GDA9UHW6 222 aaKnown RBP19.42■□□□□ 0.7
CLN3-254ENST00000637050 NT5C1B-RDH14C9J2C7 533 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 CES2O00748 559 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 ZNF185O15231 689 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 DDX3YO15523 660 aaKnown RBP19.42■□□□□ 0.7
CLN3-254ENST00000637050 FAM200BP0CF97 657 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 KRT3P12035 628 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 CXCR5P32302 372 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 PBX3P40426 434 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 SLC1A1P43005 524 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 ACADSBP45954 432 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 SLC8A3P57103 927 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 TSPY1Q01534 308 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 FPGSQ05932 587 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 MRPL58Q14197 206 aaKnown RBP19.42■□□□□ 0.7
CLN3-254ENST00000637050 MAPRE1Q15691 268 aaKnown RBP19.42■□□□□ 0.7
CLN3-254ENST00000637050 FAM171A1Q5VUB5 890 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 DCUN1D2Q6PH85 259 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 CLEC20AQ6ZU45 233 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 OTOP2Q7RTS6 562 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 TMCO2Q7Z6W1 182 aaPredicted RBP19.42■□□□□ 0.7
CLN3-254ENST00000637050 LRRTM3Q86VH5 581 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 TMEM173Q86WV6 379 aaPredicted RBP19.42■□□□□ 0.7
CLN3-254ENST00000637050 TMEM209Q96SK2 561 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 PSMB7Q99436 277 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 CARD6Q9BX69 1037 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 KRT82Q9NSB4 513 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 IP6K2Q9UHH9 426 aa19.42■□□□□ 0.7
CLN3-254ENST00000637050 BEST1O76090 585 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 EFEMP2O95967 443 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 FGBP02675 491 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 MAN1A1P33908 653 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 MKI67P46013 3256 aaKnown RBP19.41■□□□□ 0.7
CLN3-254ENST00000637050 ALDH7A1P49419 539 aaKnown RBP19.41■□□□□ 0.7
CLN3-254ENST00000637050 VARS2Q5ST30 1063 aaKnown RBP19.41■□□□□ 0.7
CLN3-254ENST00000637050 OR6B2Q6IFH4 312 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 FAM183BPQ6ZVS7 135 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 PIGZQ86VD9 579 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 CPNE8Q86YQ8 564 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 CREG2Q8IUH2 290 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 ZDHHC17Q8IUH5 632 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 CMTR2Q8IYT2 770 aaKnown RBP19.41■□□□□ 0.7
CLN3-254ENST00000637050 C7orf61Q8IZ16 206 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 BCL7CQ8WUZ0 217 aaPredicted RBP19.41■□□□□ 0.7
CLN3-254ENST00000637050 KCTD13Q8WZ19 329 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 MYLPFQ96A32 169 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 METTL5Q9NRN9 209 aaKnown RBP19.41■□□□□ 0.7
CLN3-254ENST00000637050 TMLHEQ9NVH6 421 aa19.41■□□□□ 0.7
CLN3-254ENST00000637050 PIK3R2O00459 728 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 PAPSS1O43252 624 aaPredicted RBP19.4■□□□□ 0.7
CLN3-254ENST00000637050 SPOPO43791 374 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 RFC1P35251 1148 aaPredicted RBP19.4■□□□□ 0.7
CLN3-254ENST00000637050 DNA2P51530 1060 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 OGDHQ02218 1023 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 ZNF252P-AS1Q0IIN9 211 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 FAM117BQ6P1L5 589 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 OLFML1Q6UWY5 402 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 ZNF365Q70YC5 407 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 CEP112Q8N8E3 955 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 FNIP1Q8TF40 1166 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 SMARCD1Q96GM5 515 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 SMOQ99835 787 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 ZCWPW1Q9H0M4 648 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 CSNK1G1Q9HCP0 422 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 VWA8A3KMH1 1905 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 KCNK3O14649 394 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms