RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 HAPLN2Q9GZV7 340 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 TMEM206Q9H813 350 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 PCOLCE2Q9UKZ9 415 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 TRAV19A0A0A6YYK7 116 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 HIP1RO75146 1068 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 CLTAP09496 248 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 CSH1P0DML2 217 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 CSH2P0DML3 217 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 PPP2R3AQ06190 1150 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 SCRN1Q12765 414 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 PLEKHG6Q3KR16 790 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 SLC36A4Q6YBV0 504 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 ARL14EPQ8N8R7 260 aaPredicted RBP15.7■□□□□ 0.1
CLN3-249ENST00000636685 LRRC15Q8TF66 581 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 PNMA5Q96PV4 448 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 PI4K2AQ9BTU6 479 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 BRMS1Q9HCU9 246 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 TMLHEQ9NVH6 421 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 KIAA1522Q9P206 1035 aaPredicted RBP15.7■□□□□ 0.1
CLN3-249ENST00000636685 RBM19Q9Y4C8 960 aaKnown RBP15.7■□□□□ 0.1
CLN3-249ENST00000636685 STK24Q9Y6E0 443 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 SPTA1P02549 2419 aa15.7■□□□□ 0.1
CLN3-249ENST00000636685 KNL1Q8NG31 2342 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 A0A1W2PQD8 194 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 BTBD18B2RXH4 712 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 CLDN3O15551 220 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 PRPF40AO75400 957 aaKnown RBP15.69■□□□□ 0.1
CLN3-249ENST00000636685 CDC45O75419 566 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 ITPKBP27987 946 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 MCM7P33993 719 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 MATR3P43243 847 aaKnown RBP eCLIP15.69■□□□□ 0.1
CLN3-249ENST00000636685 KIR2DL1P43626 348 aaPredicted RBP15.69■□□□□ 0.1
CLN3-249ENST00000636685 MCL1Q07820 350 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 HSF5Q4G112 596 aaPredicted RBP15.69■□□□□ 0.1
CLN3-249ENST00000636685 SPATA1Q5VX52 437 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 TRIML1Q8N9V2 468 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 SETD7Q8WTS6 366 aaKnown RBP15.69■□□□□ 0.1
CLN3-249ENST00000636685 HSPA12BQ96MM6 686 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 YTHDC1Q96MU7 727 aaKnown RBP15.69■□□□□ 0.1
CLN3-249ENST00000636685 ZSWIM6Q9HCJ5 1215 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 GCNT4Q9P109 453 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 PCDHB5Q9Y5E4 795 aa15.69■□□□□ 0.1
CLN3-249ENST00000636685 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.69■□□□□ 0.1
CLN3-249ENST00000636685 CABIN1Q9Y6J0 2220 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 MUC22E2RYF6 1773 aaPredicted RBP15.68■□□□□ 0.1
CLN3-249ENST00000636685 IGHV1OR15-9A0A0B4J2B8 117 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 FAM149AA5PLN7 773 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 C2orf78A6NCI8 922 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 MYMKA6NI61 221 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 SFI1A8K8P3 1242 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 J3QKU1 62 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 XPOTO43592 962 aaKnown RBP15.68■□□□□ 0.1
CLN3-249ENST00000636685 KAT7O95251 611 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 CYP17A1P05093 508 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 GABRG2P18507 467 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 CCT6AP40227 531 aaKnown RBP15.68■□□□□ 0.1
CLN3-249ENST00000636685 SMARCB1Q12824 385 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 GRIK2Q13002 908 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 STRN3Q13033 797 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 MAPK7Q13164 816 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 CAMK2BQ13554 666 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 DDR2Q16832 855 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 C9orf57Q5W0N0 161 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 C12orf40Q86WS4 652 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 METTL23Q86XA0 190 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 RGL4Q8IZJ4 473 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 THEM5Q8N1Q8 247 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 PNKPQ96T60 521 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 PRORYQ9H606 182 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 TOR4AQ9NXH8 423 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 CALCOCO1Q9P1Z2 691 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 ORC3Q9UBD5 711 aaPredicted RBP15.68■□□□□ 0.1
CLN3-249ENST00000636685 UXTQ9UBK9 157 aaPredicted RBP15.68■□□□□ 0.1
CLN3-249ENST00000636685 DSEQ9UL01 958 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 KIAA1024Q9UPX6 916 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 CYP46A1Q9Y6A2 500 aa15.68■□□□□ 0.1
CLN3-249ENST00000636685 GOLGA8CPA6NN73 597 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 PIRO00625 290 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 CYB561D2O14569 222 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 NOL4O94818 638 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 CTDNEP1O95476 244 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 APODP05090 189 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 ATXN1LP0C7T5 689 aaKnown RBP15.67■□□□□ 0.1
CLN3-249ENST00000636685 ZXDBP98169 803 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 KDSRQ06136 332 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 SAFBQ15424 915 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLN3-249ENST00000636685 ENOX2Q16206 610 aaKnown RBP15.67■□□□□ 0.1
CLN3-249ENST00000636685 WSCD1Q658N2 575 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 DCP1BQ8IZD4 617 aaKnown RBP15.67■□□□□ 0.1
CLN3-249ENST00000636685 SPATA18Q8TC71 538 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 PYM1Q9BRP8 204 aaKnown RBP15.67■□□□□ 0.1
CLN3-249ENST00000636685 RUSC1Q9BVN2 902 aa15.67■□□□□ 0.1
CLN3-249ENST00000636685 COL6A6A6NMZ7 2263 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 SCAMP3O14828 347 aaKnown RBP15.66■□□□□ 0.1
CLN3-249ENST00000636685 TCF3P15923 654 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 MUTP22033 750 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 FOSBP53539 338 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 KCNB1Q14721 858 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 DHCR24Q15392 516 aa15.66■□□□□ 0.1
CLN3-249ENST00000636685 JADE1Q6IE81 842 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms