RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SF3B1O75533 1304 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLN3-248ENST00000636355 ABHD14A-ACY1A0A1B0GW23 586 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 KIAA0355O15063 1070 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 ZNF185O15231 689 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 BAIAP3O94812 1187 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 FBXO21O94952 628 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 GLI1P08151 1106 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 FAM200BP0CF97 657 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 PTPN1P18031 435 aaKnown RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 CXCR5P32302 372 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 PTPN7P35236 360 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 PCK1P35558 622 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 CETN2P41208 172 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 AFF1P51825 1210 aaKnown RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 COPS2P61201 443 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 TSPY1Q01534 308 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 RNASELQ05823 741 aaKnown RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 ORC1Q13415 861 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 TIGD5Q53EQ6 642 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 INTS6LQ5JSJ4 861 aaKnown RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 DCAF12L1Q5VU92 463 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 OLFML1Q6UWY5 402 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 MTERF4Q7Z6M4 381 aaKnown RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 OSTM1Q86WC4 334 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 VSIG1Q86XK7 387 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 FUKQ8N0W3 1084 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 THEM5Q8N1Q8 247 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 SCML4Q8N228 414 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 C12orf29Q8N999 325 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 MYCBPAPQ8TBZ2 947 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 ALG3Q92685 438 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 SMARCD1Q96GM5 515 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 RBM41Q96IZ5 413 aaKnown RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 FAM193BQ96PV7 902 aaPredicted RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 CNPY3Q9BT09 278 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 TRIM62Q9BVG3 475 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 DUSP16Q9BY84 665 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 DPEP3Q9H4B8 488 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 TMEM51Q9NW97 253 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 ASNSD1Q9NWL6 643 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 DDX56Q9NY93 547 aaKnown RBP11.14□□□□□ -0.63
CLN3-248ENST00000636355 PLXNA3P51805 1871 aa11.14□□□□□ -0.63
CLN3-248ENST00000636355 MYO16Q9Y6X6 1858 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 CCDC151A5D8V7 595 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 E5RJQ4 531 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 PDE2AO00408 941 aaPredicted RBP11.13□□□□□ -0.63
CLN3-248ENST00000636355 CEP104O60308 925 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 OAZ2O95190 189 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 KRT7P08729 469 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 CCDC130P13994 396 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 TNFRSF8P28908 595 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 PTPN9P43378 593 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 ZNF143P52747 638 aaPredicted RBP11.13□□□□□ -0.63
CLN3-248ENST00000636355 ATN1P54259 1190 aaPredicted RBP11.13□□□□□ -0.63
CLN3-248ENST00000636355 YWHAHQ04917 246 aaPredicted RBP11.13□□□□□ -0.63
CLN3-248ENST00000636355 PDE4CQ08493 712 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 ZNF252P-AS1Q0IIN9 211 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 SMARCB1Q12824 385 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 IKBKEQ14164 716 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 HADHQ16836 314 aaKnown RBP11.13□□□□□ -0.63
CLN3-248ENST00000636355 ERCC6LQ2NKX8 1250 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 FAM102AQ5T9C2 384 aaPredicted RBP11.13□□□□□ -0.63
CLN3-248ENST00000636355 CYP4A22Q5TCH4 519 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 OVOS1Q6IE37 1185 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 C8orf74Q6P047 294 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 WDR93Q6P2C0 686 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 FAM171BQ6P995 826 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 C4orf50Q6ZRC1 276 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 FAM35AQ86V20 835 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 LRRN4CLQ8ND94 238 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 EXD1Q8NHP7 514 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 SLC2A14Q8TDB8 520 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 FUBP3Q96I24 572 aaKnown RBP eCLIP11.13□□□□□ -0.63
CLN3-248ENST00000636355 CASD1Q96PB1 797 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 PSMB7Q99436 277 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 TMEM106CQ9BVX2 250 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 CSNK1G1Q9HCP0 422 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 KRT82Q9NSB4 513 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 TMEM39AQ9NV64 488 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 RAB21Q9UL25 225 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 MTUS1Q9ULD2 1270 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 EFR3BQ9Y2G0 817 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 ALPK3Q96L96 1907 aa11.13□□□□□ -0.63
CLN3-248ENST00000636355 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 C2CD4BA6NLJ0 364 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 TMEM110-MUSTN1A8MSY1 372 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 ZNF487B1APH4 448 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 HSF2BPO75031 334 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 RNF8O76064 485 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 H2AFXP16104 143 aaPredicted RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 PSMA2P25787 234 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 LMO2P25791 158 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 TKTP29401 623 aaKnown RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 RPL7AP62424 266 aaKnown RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 SLC6A3Q01959 620 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 BRD3Q15059 726 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 MDH1BQ5I0G3 518 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 EFHC1Q5JVL4 640 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 PMF1Q6P1K2 205 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 CD300LGQ6UXG3 332 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms