RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 POLD1P28340 1107 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 RARRES1P49788 294 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 CC2D2BQ6DHV5 1058 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 C16orf46Q6P387 395 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 DENND5BQ6ZUT9 1274 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 POLNQ7Z5Q5 900 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 C7orf31Q8N865 590 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 CERKQ8TCT0 537 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 C10orf82Q8WW14 230 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 UTP4Q969X6 686 aaKnown RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 TMA16Q96EY4 203 aaKnown RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 HEXIM2Q96MH2 286 aaKnown RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 TARS2Q9BW92 718 aaKnown RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 CAAP1Q9H8G2 361 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 DMAP1Q9NPF5 467 aaPredicted RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 STX18Q9P2W9 335 aaKnown RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 EPS15L1Q9UBC2 864 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 SHOC2Q9UQ13 582 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 ATF5Q9Y2D1 282 aaPredicted RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 A8MXQ7 604 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 LIASO43766 372 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 KCNA4P22459 653 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 TFDP2Q14188 446 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 ACBD5Q5T8D3 534 aaPredicted RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 MARK2Q7KZI7 788 aaKnown RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 MXRA8Q9BRK3 442 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 GRIP2Q9C0E4 1043 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 FAM192AQ9GZU8 254 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 PPCSQ9HAB8 311 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 PIH1D1Q9NWS0 290 aaKnown RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 WDR35Q9P2L0 1181 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 SOX13Q9UN79 622 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 GOLGA8QA0A0J9YX86 632 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 GOLGA8OA6NCC3 632 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 A6NJR5 290 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 E9PBE3 544 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 GOLGA8NF8WBI6 632 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 KLHL41O60662 606 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 C6orf222P0C671 652 aaPredicted RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 RAG1P15918 1043 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 TTC39BQ5VTQ0 682 aaPredicted RBP11.51□□□□□ -0.57
CLN3-244ENST00000636147 ULK2Q8IYT8 1036 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 PAF1Q8N7H5 531 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 CCNYL1Q8N7R7 359 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 EME1Q96AY2 570 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 CLMNQ96JQ2 1002 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 TMEM165Q9HC07 324 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 PCDH9Q9HC56 1237 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 LZTS1Q9Y250 596 aa11.51□□□□□ -0.57
CLN3-244ENST00000636147 CAMTA1Q9Y6Y1 1673 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 PRR5-ARHGAP8B1AHC4 643 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 GM2AP17900 193 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 MSX2P35548 267 aaPredicted RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 SCNN1BP51168 640 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 ARHGAP8P85298 464 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 CUL2Q13617 745 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 ACAP1Q15027 740 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 ZNF699Q32M78 642 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 FSCBQ5H9T9 825 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 CDR2LQ86X02 465 aaPredicted RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 TRIM50Q86XT4 487 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 FAM149B1Q96BN6 582 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 DNAJC1Q96KC8 554 aaKnown RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 PRPF18Q99633 342 aaKnown RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 ZNF341Q9BYN7 854 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 DUOX1Q9NRD9 1551 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 PEX1O43933 1283 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 AVILO75366 819 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 SERPINB5P36952 375 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 NUDT2P50583 147 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 RTP1P59025 263 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 PIGHQ14442 188 aaPredicted RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 ANKRD20A4Q4UJ75 823 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 TMEM259Q4ZIN3 620 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 LIN52Q52LA3 116 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 MTHFD1LQ6UB35 978 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 ASRGL1Q7L266 308 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 EEPD1Q7L9B9 569 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 SLC7A6OSQ96CW6 309 aaPredicted RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 TUBGCP5Q96RT8 1024 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 CCT7Q99832 543 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 TBC1D22BQ9NU19 505 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 LGALS13Q9UHV8 139 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 VAV3Q9UKW4 847 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 PCDHAC2Q9Y5I4 1007 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 ROBO3Q96MS0 1386 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 CYP3A7-CYP3A51PA0A087WV96 503 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 H0YCG3 227 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 FAM155BO75949 473 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 CYP3A7P24462 503 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 EEF1B2P24534 225 aaKnown RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 GARSP41250 739 aaKnown RBP11.5□□□□□ -0.57
CLN3-244ENST00000636147 CYP1B1Q16678 543 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 SLC26A11Q86WA9 606 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 SEPT12Q8IYM1 358 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 OR6Y1Q8NGX8 325 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 APOPT1Q96IL0 206 aa11.5□□□□□ -0.57
CLN3-244ENST00000636147 CYB561D2O14569 222 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 FKBP6O75344 327 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 KLHL2O95198 593 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms