RNA–Protein interactions for RNA: ENST00000634363.1

SNRNP48-203, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 781 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-203ENST00000634363 HOXA6P31267 233 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 HOXD13P35453 343 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 GPR15P49685 360 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 NLRP12P59046 1061 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 POU5F1Q01860 360 aaKnown RBP16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 SMARCB1Q12824 385 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 SV2CQ496J9 727 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 SDHAF4Q5VUM1 108 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 CC2D1AQ6P1N0 951 aaPredicted RBP16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 TMEM150AQ86TG1 271 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 ELOA2Q8IYF1 753 aaPredicted RBP16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 GPD1LQ8N335 351 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 C12orf50Q8NA57 414 aaPredicted RBP16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 USP13Q92995 863 aaPredicted RBP16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 GSDMAQ96QA5 445 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 FAM83CQ9BQN1 747 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 HPS4Q9NQG7 708 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 AGPAT3Q9NRZ7 376 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 TDP1Q9NUW8 608 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 TMLHEQ9NVH6 421 aa16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 POLR3BQ9NW08 1133 aaPredicted RBP16.68■□□□□ 0.26
SNRNP48-203ENST00000634363 GOLGA8IPA6NC78 632 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 GOLGA8JA6NMD2 632 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 ATG13O75143 517 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 IL18RAPO95256 599 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 F11P03951 625 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 ARSAP15289 507 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 TFAMQ00059 246 aaKnown RBP16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 TSPY1Q01534 308 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 TMEM196Q5HYL7 178 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 FSTL4Q6MZW2 842 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 CRELD2Q6UXH1 353 aaPredicted RBP16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 CACNA2D4Q7Z3S7 1137 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 KBTBD6Q86V97 674 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 EFCAB13Q8IY85 973 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 GAB3Q8WWW8 586 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 MRPS31Q92665 395 aaKnown RBP16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 FBRSL1Q9HCM7 1045 aaKnown RBP16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 RBAKQ9NYW8 714 aaPredicted RBP16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 HSPBP1Q9NZL4 362 aa16.67■□□□□ 0.26
SNRNP48-203ENST00000634363 GREB1Q4ZG55 1949 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 TGFB1I1O43294 461 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 FOXD2O60548 495 aaPredicted RBP16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 EGFP01133 1207 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 HMGA1P17096 107 aaKnown RBP16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 GALK1P51570 392 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 CYP2J2P51589 502 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 AMPD2Q01433 879 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 DDR2Q16832 855 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 ST3GAL2Q16842 350 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 BRSK2Q8IWQ3 736 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 ERCC4Q92889 916 aaPredicted RBP16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 ZNF560Q96MR9 790 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 GTPBP4Q9BZE4 634 aaKnown RBP16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 KIAA1586Q9HCI6 787 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 TRPC7Q9HCX4 862 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 ZMYM5Q9UJ78 669 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 AGAP1Q9UPQ3 857 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 PCDHA5Q9Y5H7 936 aa16.66■□□□□ 0.26
SNRNP48-203ENST00000634363 OBSL1O75147 1896 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 SPAG17Q6Q759 2223 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 ZNF233A6NK53 670 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 TRDMT1O14717 391 aaKnown RBP16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 CLIC2O15247 247 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 RNF40O75150 1001 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 ITGB3P05106 788 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 CSH1P0DML2 217 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 CSH2P0DML3 217 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 ACAT1P24752 427 aaKnown RBP16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 CYP2F1P24903 491 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 DDX6P26196 483 aaKnown RBP eCLIP16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 POLR2BP30876 1174 aaKnown RBP16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 DDX1Q92499 740 aaKnown RBP16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 CHFRQ96EP1 664 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 CYP2S1Q96SQ9 504 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 SMOC1Q9H4F8 434 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 RXFP3Q9NSD7 469 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 DDX43Q9NXZ2 648 aaKnown RBP16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 GTF3C4Q9UKN8 822 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 MAPK8IP1Q9UQF2 711 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 EML5Q05BV3 1969 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 CACNA1BQ00975 2339 aa16.65■□□□□ 0.26
SNRNP48-203ENST00000634363 PDXKO00764 312 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 CALUO43852 315 aaPredicted RBP16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 HUS1O60921 280 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 KRT19P08727 400 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 ZNF806P0C7X5 589 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 PNPLA4P41247 253 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 NFE2Q16621 373 aaPredicted RBP16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 ZNF658Q5TYW1 1059 aaPredicted RBP16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 NAIF1Q69YI7 327 aaPredicted RBP16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 MON1AQ86VX9 555 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 NT5DC4Q86YG4 428 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 C12orf56Q8IXR9 622 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 SMYD4Q8IYR2 804 aaPredicted RBP16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 GUF1Q8N442 669 aaKnown RBP16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 PDCL2Q8N4E4 241 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 CSGALNACT2Q8N6G5 542 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 XXYLT1Q8NBI6 393 aa16.64■□□□□ 0.25
SNRNP48-203ENST00000634363 ZSWIM2Q8NEG5 633 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms