RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 LPIN3Q9BQK8 851 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 FAM124BQ9H5Z6 455 aaPredicted RBP19.23■□□□□ 0.67
CLN3-239ENST00000628023 CBX8Q9HC52 389 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 WDR6Q9NNW5 1121 aaKnown RBP19.23■□□□□ 0.67
CLN3-239ENST00000628023 CLUHO75153 1309 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 GOLGA6L19H0YKK7 550 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 GALR2O43603 387 aaPredicted RBP19.22■□□□□ 0.67
CLN3-239ENST00000628023 ZNF18P17022 549 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 BDNFP23560 247 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 COPB1P53618 953 aaKnown RBP19.22■□□□□ 0.67
CLN3-239ENST00000628023 RPL10AP62906 217 aaKnown RBP19.22■□□□□ 0.67
CLN3-239ENST00000628023 GCNT1Q02742 428 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 PABPC1LQ4VXU2 614 aaKnown RBP19.22■□□□□ 0.67
CLN3-239ENST00000628023 ITIH5Q86UX2 942 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 ARHGEF19Q8IW93 802 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 TWNKQ96RR1 684 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 CORO1BQ9BR76 489 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 ELOVL4Q9GZR5 314 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 SMOC2Q9H3U7 446 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 TSPY26PQ9H489 355 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 KCNK12Q9HB15 430 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 FAM49BQ9NUQ9 324 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 FBXL21Q9UKT6 434 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 PCDHB4Q9Y5E5 795 aa19.22■□□□□ 0.67
CLN3-239ENST00000628023 CACNA1HO95180 2353 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 C2orf16Q68DN1 1984 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 ATP1A3P13637 1013 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 CCDC130P13994 396 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 PTPN2P17706 415 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 SLC9A1P19634 815 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 PON1P27169 355 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 ANXA13P27216 316 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 GRIK1P39086 918 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 CLCN5P51795 746 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 NTHL1P78549 312 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 VSTM1Q6UX27 236 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 GET4Q7L5D6 327 aaPredicted RBP19.21■□□□□ 0.67
CLN3-239ENST00000628023 DENND4AQ7Z401 1863 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 LUZP1Q86V48 1076 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 CRYBG2Q8N1P7 616 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 GIPC2Q8TF65 315 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 KAT5Q92993 513 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 NXPE3Q969Y0 559 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 FAM81BQ96LP2 452 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 HEXIM2Q96MH2 286 aaKnown RBP19.21■□□□□ 0.67
CLN3-239ENST00000628023 PHOX2BQ99453 314 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 ZNF518BQ9C0D4 1074 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 UBE2TQ9NPD8 197 aaPredicted RBP19.21■□□□□ 0.67
CLN3-239ENST00000628023 ASAH2Q9NR71 780 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 HCFC1R1Q9NWW0 138 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.21■□□□□ 0.67
CLN3-239ENST00000628023 APEX2Q9UBZ4 518 aa19.21■□□□□ 0.67
CLN3-239ENST00000628023 LIMA1Q9UHB6 759 aaKnown RBP19.21■□□□□ 0.67
CLN3-239ENST00000628023 CLDN5O00501 218 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 PAPLNO95428 1278 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 RHOP08100 348 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 ATF6P18850 670 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 MAGEA11P43364 429 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 GPR15P49685 360 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 MFAP3P55082 362 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 IQCB1Q15051 598 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 DDR2Q16832 855 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 CYP4A22Q5TCH4 519 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 SDHAF4Q5VUM1 108 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 PHLDB3Q6NSJ2 640 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 TMEM270Q6UE05 265 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 LRSAM1Q6UWE0 723 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 PDZD4Q76G19 769 aaPredicted RBP19.2■□□□□ 0.66
CLN3-239ENST00000628023 FAM35AQ86V20 835 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 C12orf29Q8N999 325 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 FLCNQ8NFG4 579 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 SLC2A14Q8TDB8 520 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 GPR152Q8TDT2 470 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 WHAMMQ8TF30 809 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 TMEM176AQ96HP8 235 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 LSM14BQ9BX40 385 aaKnown RBP19.2■□□□□ 0.66
CLN3-239ENST00000628023 B3GNT5Q9BYG0 378 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 HSD3B7Q9H2F3 369 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 KRT82Q9NSB4 513 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 CEP72Q9P209 647 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 DNMT3BQ9UBC3 853 aaKnown RBP19.2■□□□□ 0.66
CLN3-239ENST00000628023 DUSP12Q9UNI6 340 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 ASB3Q9Y575 518 aa19.2■□□□□ 0.66
CLN3-239ENST00000628023 LGALS16A8MUM7 142 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 H0Y858 1186 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 TRIM66O15016 1216 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 MYL4P12829 197 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 KRT5P13647 590 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 CD19P15391 556 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 FSHRP23945 695 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 ADORA2BP29275 332 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 RAD23BP54727 409 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 APBA1Q02410 837 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 GJB7Q6PEY0 223 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 ENOSF1Q7L5Y1 443 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 SLC4A11Q8NBS3 891 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 LEMD2Q8NC56 503 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 PSMG2Q969U7 264 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 SMARCD1Q96GM5 515 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 PCMTD1Q96MG8 357 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms