RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 LRPAP1P30533 357 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 PCK1P35558 622 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 ZNF143P52747 638 aaPredicted RBP23.21■■□□□ 1.31
PNKP-220ENST00000627232 ZNF844Q08AG5 666 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 TAZQ16635 292 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 EMC10Q5UCC4 262 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 CXCL17Q6UXB2 119 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 SESTD1Q86VW0 696 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 C12orf29Q8N999 325 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 CCDC114Q96M63 670 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 TSPYL1Q9H0U9 437 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 CHST12Q9NRB3 414 aa23.21■■□□□ 1.31
PNKP-220ENST00000627232 DRG1Q9Y295 367 aaKnown RBP23.21■■□□□ 1.31
PNKP-220ENST00000627232 LRRD1A4D1F6 860 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 C3orf70A6NLC5 250 aaPredicted RBP23.2■■□□□ 1.3
PNKP-220ENST00000627232 E5RJQ4 531 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 LIASO43766 372 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 NUDT17P0C025 328 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 GPD1P21695 349 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 OR6B2Q6IFH4 312 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 GDF6Q6KF10 455 aaPredicted RBP23.2■■□□□ 1.3
PNKP-220ENST00000627232 FAM183BPQ6ZVS7 135 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 SERINC5Q86VE9 423 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 TTC30AQ86WT1 665 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 EMC1Q8N766 993 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 CCDC89Q8N998 374 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 CCHCR1Q8TD31 782 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 SLC35F5Q8WV83 523 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 CNPY3Q9BT09 278 aa23.2■■□□□ 1.3
PNKP-220ENST00000627232 FRMD8P1Q9BZ68 369 aaPredicted RBP23.2■■□□□ 1.3
PNKP-220ENST00000627232 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.2■■□□□ 1.3
PNKP-220ENST00000627232 TMEM88BA6NKF7 163 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 A6NNZ2 444 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 A8MXQ7 604 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 PGK1P00558 417 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 RARGP13631 454 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 KRT10P13645 584 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 ATF2P15336 505 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 SKOR1P84550 965 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 TUBB8Q3ZCM7 444 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 AGBL2Q5U5Z8 902 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 RHBDF2Q6PJF5 856 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 ZNF365Q70YC5 407 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 TMEM110Q86TL2 294 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 ZDHHC17Q8IUH5 632 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 HACE1Q8IYU2 909 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 KBTBD7Q8WVZ9 684 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 CYLDQ9NQC7 956 aa23.19■■□□□ 1.3
PNKP-220ENST00000627232 C2CD4BA6NLJ0 364 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 DPYSL4O14531 572 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 ADAMTS4O75173 837 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 RPS6KA5O75582 802 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 GNL1P36915 607 aaPredicted RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 SOX4Q06945 474 aaPredicted RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 KAZNQ674X7 775 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 TOP6BLQ8N6T0 577 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 ARRDC4Q8NCT1 418 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 APPL2Q8NEU8 664 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 CMASQ8NFW8 434 aaPredicted RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 SENP6Q9GZR1 1112 aaPredicted RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 EPB41L4BQ9H329 900 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 SNX25Q9H3E2 840 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 SPTLC1O15269 473 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 TRUB2O95900 331 aaKnown RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 KDELR1P24390 212 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 IL1R2P27930 398 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 MIPP30301 263 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 PRKCZQ05513 592 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 CACNB2Q08289 660 aaPredicted RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 ADCY2Q08462 1091 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 BYSLQ13895 437 aaKnown RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 PMF1Q6P1K2 205 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 CROCCP2Q86T23 111 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 SMC1BQ8NDV3 1235 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 NKD2Q969F2 451 aaPredicted RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 PPP1R10Q96QC0 940 aaKnown RBP23.18■■□□□ 1.3
PNKP-220ENST00000627232 NCAPGQ9BPX3 1015 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 TRAIPQ9BWF2 469 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 ZWILCHQ9H900 591 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 FAM49BQ9NUQ9 324 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 SLC38A7Q9NVC3 462 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 ST3GAL5Q9UNP4 418 aa23.18■■□□□ 1.3
PNKP-220ENST00000627232 PTGESO14684 152 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 TP73O15350 636 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 SHOX2O60902 331 aaPredicted RBP23.17■■□□□ 1.3
PNKP-220ENST00000627232 HUS1O60921 280 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 CAPN2P17655 700 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 WARSP23381 471 aaKnown RBP23.17■■□□□ 1.3
PNKP-220ENST00000627232 KLRC2P26717 231 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 CST5P28325 142 aaPredicted RBP23.17■■□□□ 1.3
PNKP-220ENST00000627232 SCNN1AP37088 669 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 BCAT1P54687 386 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 SLC6A3Q01959 620 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 BST2Q10589 180 aaKnown RBP23.17■■□□□ 1.3
PNKP-220ENST00000627232 DENND2CQ68D51 928 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 OLFML1Q6UWY5 402 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 KDM7AQ6ZMT4 941 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 TRMT10CQ7L0Y3 403 aaKnown RBP23.17■■□□□ 1.3
PNKP-220ENST00000627232 ANKRD52Q8NB46 1076 aa23.17■■□□□ 1.3
PNKP-220ENST00000627232 TTC13Q8NBP0 860 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms