RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 INSL5Q9Y5Q6 135 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 ATP8B3O60423 1300 aa20.92■□□□□ 0.94
UPF3A-211ENST00000618700 GOLGA6L3A6NEY3 463 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 PRRG1O14668 218 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 TBX10O75333 385 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 SRGAP2BP0DMP2 458 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 BDNFP23560 247 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 BRD2P25440 801 aaKnown RBP20.91■□□□□ 0.94
UPF3A-211ENST00000618700 GNA15P30679 374 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 TRIM14Q14142 442 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 ELMSAN1Q6PJG2 1045 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 BRWD1Q9NSI6 2320 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 CLEC1BQ9P126 229 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.91■□□□□ 0.94
UPF3A-211ENST00000618700 SLC27A5Q9Y2P5 690 aa20.91■□□□□ 0.94
UPF3A-211ENST00000618700 LRRC53A6NM62 1247 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 SOAT2O75908 522 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 GFPT2O94808 682 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 POU2F2P09086 479 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 ADORA2BP29275 332 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 LTBRP36941 435 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 TUFMP49411 452 aaKnown RBP20.9■□□□□ 0.94
UPF3A-211ENST00000618700 CACNA2D1P54289 1103 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 BPIFB4P59827 614 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 PTK2Q05397 1052 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 STILQ15468 1287 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 CCDC85BQ15834 202 aaPredicted RBP20.9■□□□□ 0.94
UPF3A-211ENST00000618700 MGAT5BQ3V5L5 792 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 ANKRD54Q6NXT1 300 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 SLC47A2Q86VL8 602 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 EPS8L1Q8TE68 723 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 SMARCD1Q96GM5 515 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 SEPT5Q99719 369 aaPredicted RBP20.9■□□□□ 0.94
UPF3A-211ENST00000618700 MED10Q9BTT4 135 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 SFXN1Q9H9B4 322 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 GRPEL1Q9HAV7 217 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 CSNK1G1Q9HCP0 422 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 KRT82Q9NSB4 513 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 ZDHHC7Q9NXF8 308 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 CLDND1Q9NY35 253 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 TSPAN16Q9UKR8 245 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 CAPN11Q9UMQ6 739 aa20.9■□□□□ 0.94
UPF3A-211ENST00000618700 RFPL2O75678 378 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 HNRNPA1P09651 372 aaKnown RBP eCLIP20.89■□□□□ 0.93
UPF3A-211ENST00000618700 FAM200BP0CF97 657 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 ATF6P18850 670 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 DLX2Q07687 328 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-211ENST00000618700 TBX2Q13207 712 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-211ENST00000618700 CNGA2Q16280 664 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 MEA1Q16626 185 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 GOLGA7BQ2TAP0 167 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 PPM1LQ5SGD2 360 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 E4F1Q66K89 784 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-211ENST00000618700 LCLAT1Q6UWP7 414 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 TTC30AQ86WT1 665 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 CMASQ8NFW8 434 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-211ENST00000618700 MSLNLQ96KJ4 702 aa20.89■□□□□ 0.93
UPF3A-211ENST00000618700 THAP12O43422 761 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 AP1G2O75843 785 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 ADCY5O95622 1261 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 CYP11B1P15538 503 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 NPR3P17342 541 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 HOXB8P17481 243 aaPredicted RBP20.88■□□□□ 0.93
UPF3A-211ENST00000618700 GPR15P49685 360 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 RPL10AP62906 217 aaKnown RBP20.88■□□□□ 0.93
UPF3A-211ENST00000618700 ZBED6P86452 979 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 TWF1Q12792 350 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 PKDCCQ504Y2 493 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 SYCE2Q6PIF2 218 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 TMC6Q7Z403 805 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 FMNL3Q8IVF7 1028 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 ANKRD52Q8NB46 1076 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 ZMIZ2Q8NF64 920 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 ZNF606Q8WXB4 792 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 DDX1Q92499 740 aaKnown RBP20.88■□□□□ 0.93
UPF3A-211ENST00000618700 ZNF707Q96C28 371 aaPredicted RBP20.88■□□□□ 0.93
UPF3A-211ENST00000618700 C8orf48Q96LL4 319 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 CEP295NLQ96MC4 621 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 SMOQ99835 787 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 DUSP16Q9BY84 665 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 DMAP1Q9NPF5 467 aaPredicted RBP20.88■□□□□ 0.93
UPF3A-211ENST00000618700 AIPL1Q9NZN9 384 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 NOCTQ9UK39 431 aaKnown RBP20.88■□□□□ 0.93
UPF3A-211ENST00000618700 PATJQ8NI35 1801 aa20.88■□□□□ 0.93
UPF3A-211ENST00000618700 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.87■□□□□ 0.93
UPF3A-211ENST00000618700 F8VP50 259 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 TRIM66O15016 1216 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 BEST1O76090 585 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 MICAL2O94851 1124 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 CDC25BP30305 580 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 CASP14P31944 242 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 PDE6CP51160 858 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 BCAT1P54687 386 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 PLD1Q13393 1074 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 ARID5BQ14865 1188 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 DDR2Q16832 855 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 CLEC20AQ6ZU45 233 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 NOP9Q86U38 636 aaKnown RBP20.87■□□□□ 0.93
UPF3A-211ENST00000618700 GPIHBP1Q8IV16 184 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 ZNF397Q8NF99 534 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms