RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 AAASQ9NRG9 546 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 MRPL42Q9Y6G3 142 aaKnown RBP12.4□□□□□ -0.42
PDPN-211ENST00000617617 MACROD2A1Z1Q3 448 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 SIGLEC16A6NMB1 481 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 F8W810 466 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 RRM1P23921 792 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 SLC1A1P43005 524 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 AMPD2Q01433 879 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 CFAP221Q4G0U5 840 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 KCNT2Q6UVM3 1135 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 SYT10Q6XYQ8 523 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 C4orf50Q6ZRC1 276 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 FAM35AQ86V20 835 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 PASD1Q8IV76 773 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 ZNF564Q8TBZ8 553 aaPredicted RBP12.4□□□□□ -0.42
PDPN-211ENST00000617617 SLC2A14Q8TDB8 520 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 BCL7CQ8WUZ0 217 aaPredicted RBP12.4□□□□□ -0.42
PDPN-211ENST00000617617 PIK3R5Q8WYR1 880 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 CPXM1Q96SM3 734 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 NUP85Q9BW27 656 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 GPR62Q9BZJ7 368 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 L2HGDHQ9H9P8 463 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 RWDD3Q9Y3V2 267 aa12.4□□□□□ -0.42
PDPN-211ENST00000617617 CTAGE9A4FU28 777 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 HCRTO43612 131 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 SOD2P04179 222 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 MDH1BQ5I0G3 518 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 ZNF280DQ6N043 979 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 HERC6Q8IVU3 1022 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 PCED1BQ96HM7 432 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 RAD9AQ99638 391 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 MTRRQ9UBK8 725 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 TMEM191CA6NGB0 347 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 ATP2C2O75185 946 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 PALMO75781 387 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 C1RP00736 705 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 ERBB2P04626 1255 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 CCDC130P13994 396 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 ABCB4P21439 1286 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 SLC8A3P57103 927 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 CREMQ03060 361 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 PDE4CQ08493 712 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 ACAP1Q15027 740 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 NFE2Q16621 373 aaPredicted RBP12.39□□□□□ -0.43
PDPN-211ENST00000617617 USP41Q3LFD5 358 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 CLEC20AQ6ZU45 233 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 FEZF2Q8TBJ5 459 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 IPO4Q8TEX9 1081 aaKnown RBP12.39□□□□□ -0.43
PDPN-211ENST00000617617 RABGGTAQ92696 567 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 C11orf70Q9BRQ4 267 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 TTPALQ9BTX7 342 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 VN1R3Q9BXE9 311 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 COMMD8Q9NX08 183 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 SPG21Q9NZD8 308 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 DNAI1Q9UI46 699 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 LZTS1Q9Y250 596 aa12.39□□□□□ -0.43
PDPN-211ENST00000617617 PRG3Q9Y2Y8 225 aaPredicted RBP12.39□□□□□ -0.43
PDPN-211ENST00000617617 MYBPHLA2RUH7 354 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 HHLA1C9JL84 531 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 I3L4J1 428 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 DPYSL4O14531 572 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 FAM200BP0CF97 657 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 DSG1Q02413 1049 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 BTG3Q14201 252 aaPredicted RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 FAM171A1Q5VUB5 890 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 SLC8B1Q6J4K2 584 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 PMF1Q6P1K2 205 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 BEND5Q7L4P6 421 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 NT5DC3Q86UY8 548 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 MYLPFQ96A32 169 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 HES6Q96HZ4 224 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 PLVAPQ9BX97 442 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 OSGEPQ9NPF4 335 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 FAM49BQ9NUQ9 324 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 DENND4CQ5VZ89 1909 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 FBXO21O94952 628 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 UPP2O95045 317 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 GLI1P08151 1106 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 CTNNA2P26232 953 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 PSMC1P62191 440 aaKnown RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 PAN2Q504Q3 1202 aaKnown RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 VSTM1Q6UX27 236 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 OTOP2Q7RTS6 562 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 HASPINQ8TF76 798 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 CD101Q93033 1021 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 CTTNBP2NLQ9P2B4 639 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 TIMM13Q9Y5L4 95 aaPredicted RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 SLC4A7Q9Y6M7 1214 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 OBSL1O75147 1896 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 MIF4GDA9UHW6 222 aaKnown RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 C5orf67F2Z3F1 127 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 BUB1BO60566 1050 aaPredicted RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 GABBR2O75899 941 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 ACAT1P24752 427 aaKnown RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 GPR17Q13304 367 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 OLFML1Q6UWY5 402 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 LRRTM3Q86VH5 581 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 TMEM173Q86WV6 379 aaPredicted RBP12.38□□□□□ -0.43
PDPN-211ENST00000617617 DNAAF5Q86Y56 855 aa12.38□□□□□ -0.43
PDPN-211ENST00000617617 UBA3Q8TBC4 463 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms