RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	PDCD11	Q14690	1871 aa	Known RBP	12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	ESYT3	A0FGR9	886 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	DDHD2	O94830	711 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	FTL	P02792	175 aa	Predicted RBP	12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	VDR	P11473	427 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	BRD2	P25440	801 aa	Known RBP	12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	GNL1	P36915	607 aa	Predicted RBP	12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	DNA2	P51530	1060 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	CLEC16A	Q2KHT3	1053 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	PPP1R2P3	Q6NXS1	205 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	DSTYK	Q6XUX3	929 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	ZNF280B	Q86YH2	543 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	ADGRF2	Q8IZF7	708 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	TMEM86A	Q8N2M4	240 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	C3orf58	Q8NDZ4	430 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	TET1	Q8NFU7	2136 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	OR6B3	Q8NGW1	331 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	ARL8A	Q96BM9	186 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	RNPC3	Q96LT9	517 aa	Known RBP	12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	HEXIM2	Q96MH2	286 aa	Known RBP	12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	TWNK	Q96RR1	684 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	UVRAG	Q9P2Y5	699 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	HMGXB4	Q9UGU5	601 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	RASAL2	Q9UJF2	1139 aa		12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	MKI67	P46013	3256 aa	Known RBP	12.35	□□□□□ -0.43
VRK3-223	ENST00000601341	ARHGEF37	A1IGU5	675 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341		A8MXQ7	604 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341		H0YGN5	161 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	MYO1C	O00159	1063 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	LSM8	O95777	96 aa	Known RBP	12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	FGG	P02679	453 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	CYP1A1	P04798	512 aa	Predicted RBP	12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	WARS	P23381	471 aa	Known RBP	12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	CHRNA3	P32297	505 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	SGO2	Q562F6	1265 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	AGBL2	Q5U5Z8	902 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	CROCCP2	Q86T23	111 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	COLGALT2	Q8IYK4	626 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	KBTBD7	Q8WVZ9	684 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	TFAP2B	Q92481	460 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	DDX47	Q9H0S4	455 aa	Known RBP	12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	THAP2	Q9H0W7	228 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	TMBIM4	Q9HC24	238 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	OSGEP	Q9NPF4	335 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	TAS2R14	Q9NYV8	317 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	PCYOX1	Q9UHG3	505 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	GGA2	Q9UJY4	613 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	PCDHGC3	Q9UN70	934 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	CEP83	Q9Y592	693 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	NFS1	Q9Y697	457 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	SCN1A	P35498	2009 aa		12.34	□□□□□ -0.43
VRK3-223	ENST00000601341	KRT14	P02533	472 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	AMH	P03971	560 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	MYZAP	P0CAP1	466 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	UNG	P13051	313 aa	Predicted RBP	12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	NR1D1	P20393	614 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	IGFBP6	P24592	240 aa	Predicted RBP	12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	HSD17B3	P37058	310 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	OR1G1	P47890	313 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	LHX1	P48742	406 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	CORO7	P57737	925 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	MRPS25	P82663	173 aa	Known RBP	12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	ORC1	Q13415	861 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	PPIG	Q13427	754 aa	Known RBP eCLIP	12.33	□□□□□ -0.44	2e-6	■■■■□ 20.1
VRK3-223	ENST00000601341	SCN5A	Q14524	2016 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	STIL	Q15468	1287 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	CNGA2	Q16280	664 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	TIGD5	Q53EQ6	642 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	WSCD1	Q658N2	575 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	ACAD10	Q6JQN1	1059 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	B4GALNT4	Q76KP1	1039 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	TMC3	Q7Z5M5	1100 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	SPATA18	Q8TC71	538 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	CYFIP2	Q96F07	1278 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	TNIP3	Q96KP6	325 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	PLVAP	Q9BX97	442 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	AP1M1	Q9BXS5	423 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	ZNF518B	Q9C0D4	1074 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	GOLPH3	Q9H4A6	298 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	IL23A	Q9NPF7	189 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	GTF3C4	Q9UKN8	822 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	DSE	Q9UL01	958 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	PLAA	Q9Y263	795 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	ALG6	Q9Y672	507 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	TTC3	P53804	2025 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	TBKBP1	A7MCY6	615 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	TMEM189-UBE2V1	I3L0A0	370 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341		M0QZQ0	153 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	EBAG9	O00559	213 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	GABRD	O14764	452 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	PPFIA2	O75334	1257 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	BAIAP3	O94812	1187 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	UPP2	O95045	317 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	ALDH2	P05091	517 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	CYP1A2	P05177	515 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	CFH	P08603	1231 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	ODC1	P11926	461 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	ABCB4	P21439	1286 aa		12.33	□□□□□ -0.44
VRK3-223	ENST00000601341	CTNNA2	P26232	953 aa		12.33	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms