RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CUL3Q13618 768 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 BMPR2Q13873 1038 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 FAXCQ5TGI0 409 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 RGS9BPQ6ZS82 235 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 FAM71DQ8N9W8 422 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 PYDC1Q8WXC3 89 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 GORASP1Q9BQQ3 440 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 MRPL47Q9HD33 250 aaKnown RBP19.21■□□□□ 0.67
UPF1-210ENST00000600689 AVENQ9NQS1 362 aaPredicted RBP19.21■□□□□ 0.67
UPF1-210ENST00000600689 TELO2Q9Y4R8 837 aa19.21■□□□□ 0.67
UPF1-210ENST00000600689 LYNP07948 512 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 ASNSP08243 561 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 PTGER2P43116 358 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 EPHB1P54762 984 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 NOMO3P69849 1222 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 TMPRSS15P98073 1019 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 LMNB2Q03252 620 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 AP1B1Q10567 949 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 MORF4L2Q15014 288 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 CDHR3Q6ZTQ4 885 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 FAM83AQ86UY5 434 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 POU5F2Q8N7G0 328 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 ATP11CQ8NB49 1132 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 AGBL3Q8NEM8 1001 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 ZBTB45Q96K62 511 aaPredicted RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 TLE6Q9H808 572 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 PPP1R1BQ9UD71 204 aaPredicted RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 PPM1HQ9ULR3 514 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 EXOC7Q9UPT5 735 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 RBBP6Q7Z6E9 1792 aaKnown RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 TMEM63AO94886 807 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 TOP3BO95985 862 aaKnown RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 CYP1A1P04798 512 aaPredicted RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 PHBP35232 272 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 VCPP55072 806 aaKnown RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 USP4Q13107 963 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 KBTBD12Q3ZCT8 623 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 PPM1NQ8N819 430 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 CEP170P1Q96L14 293 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 FAM81BQ96LP2 452 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 SENP7Q9BQF6 1050 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 UBE2OQ9C0C9 1292 aaKnown RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 EHMT1Q9H9B1 1298 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 RAVER2Q9HCJ3 691 aaKnown RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 XPO7Q9UIA9 1087 aaKnown RBP19.2■□□□□ 0.66
UPF1-210ENST00000600689 FZD1Q9UP38 647 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 PTPRJQ12913 1337 aa19.2■□□□□ 0.66
UPF1-210ENST00000600689 CST8O60676 142 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 SORBS2O94875 1100 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 RTP1P59025 263 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 OCRLQ01968 901 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 MCL1Q07820 350 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 MTMR1Q13613 665 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 EFHC2Q5JST6 749 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 ZBTB41Q5SVQ8 909 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 FAM160B2Q86V87 743 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 TDRPQ86YL5 185 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 ZNF276Q8N554 614 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 BANPQ8N9N5 519 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 CPT1BQ92523 772 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 STX18Q9P2W9 335 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 SLC24A2Q9UI40 661 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 ZBTB7AO95365 584 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 INHBAP08476 426 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 UBAP2LQ14157 1087 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 SCARA5Q6ZMJ2 495 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 PRPF39Q86UA1 669 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 ZBED3Q96IU2 234 aaPredicted RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 TRIM56Q9BRZ2 755 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 CYP4F11Q9HBI6 524 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 APOBEC3GQ9HC16 384 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 CD48P09326 243 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 ANPEPP15144 967 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 BRD2P25440 801 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 ELK3P41970 407 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 TRAF1Q13077 416 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 TDRD10Q5VZ19 366 aaKnown RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 DNAJC24Q6P3W2 148 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 GPD1LQ8N335 351 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 CCDC110Q8TBZ0 833 aa19.19■□□□□ 0.66
UPF1-210ENST00000600689 EZH1Q92800 747 aaPredicted RBP19.19■□□□□ 0.66
UPF1-210ENST00000600689 DCAF8L1A6NGE4 600 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 IRF6O14896 467 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 CIB2O75838 187 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 DLDP09622 509 aaKnown RBP19.18■□□□□ 0.66
UPF1-210ENST00000600689 NLRP11P59045 1033 aaKnown RBP19.18■□□□□ 0.66
UPF1-210ENST00000600689 FKBP1CQ5VVH2 108 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 MTHFD1LQ6UB35 978 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 RELL1Q8IUW5 271 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 UNC45BQ8IWX7 931 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 RCOR2Q8IZ40 523 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 GSTCDQ8NEC7 633 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 SKA1Q96BD8 255 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 RBM41Q96IZ5 413 aaKnown RBP19.18■□□□□ 0.66
UPF1-210ENST00000600689 PANX3Q96QZ0 392 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 NDE1Q9NXR1 346 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 PACSIN3Q9UKS6 424 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 COQ4Q9Y3A0 265 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 ICAM1P05362 532 aa19.18■□□□□ 0.66
UPF1-210ENST00000600689 RPL22P35268 128 aaKnown RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms