RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 MAGED2Q9UNF1 606 aaPredicted RBP12.97□□□□□ -0.33
LIG1-217ENST00000599165 GPR179Q6PRD1 2367 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 CLDN5O00501 218 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 STK25O00506 426 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 CHADO15335 359 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 PHACTR2O75167 634 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 HLA-DRAP01903 254 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 CD44P16070 742 aaKnown RBP12.96□□□□□ -0.33
LIG1-217ENST00000599165 SOX9P48436 509 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 GCLMP48507 274 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 ADAM9Q13443 819 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 EDRF1Q3B7T1 1238 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 ZNF667Q5HYK9 610 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 ZNF658Q5TYW1 1059 aaPredicted RBP12.96□□□□□ -0.33
LIG1-217ENST00000599165 VSTM1Q6UX27 236 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 SCARA5Q6ZMJ2 495 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 C4orf50Q6ZRC1 276 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 MON1AQ86VX9 555 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 SCN4BQ8IWT1 228 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 FAM186BQ8IYM0 893 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 CMTM8Q8IZV2 173 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 MAB21L3Q8N8X9 362 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 B3GALNT2Q8NCR0 500 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 TAS1R2Q8TE23 839 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 IRF7Q92985 503 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 CCDC47Q96A33 483 aaKnown RBP12.96□□□□□ -0.33
LIG1-217ENST00000599165 SHDQ96IW2 340 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 SPATA17Q96L03 361 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 GSDMAQ96QA5 445 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 TWNKQ96RR1 684 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 OSBPL6Q9BZF3 934 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 SNX25Q9H3E2 840 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 GCNT4Q9P109 453 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 MAGEC2Q9UBF1 373 aaPredicted RBP12.96□□□□□ -0.33
LIG1-217ENST00000599165 FRMD4BQ9Y2L6 1034 aa12.96□□□□□ -0.33
LIG1-217ENST00000599165 R3HCC1Q9Y3T6 440 aaKnown RBP12.96□□□□□ -0.33
LIG1-217ENST00000599165 GVINP1Q7Z2Y8 2422 aa12.96□□□□□ -0.34
LIG1-217ENST00000599165 OTOGLQ3ZCN5 2332 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 TRIM49BA6NDI0 452 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 OTOL1A6NHN0 477 aaPredicted RBP12.95□□□□□ -0.34
LIG1-217ENST00000599165 FAM170BA6NMN3 283 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 A8MXQ7 604 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 PROB1E7EW31 1015 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 F8VP50 259 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ZNF263O14978 683 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 PSMC2P35998 433 aaKnown RBP12.95□□□□□ -0.34
LIG1-217ENST00000599165 NBL1P41271 181 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ZXDBP98169 803 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 CYP27A1Q02318 531 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ENPEPQ07075 957 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 TNK2Q07912 1038 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ORC1Q13415 861 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 UBXN2BQ14CS0 331 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 MAPRE1Q15691 268 aaKnown RBP12.95□□□□□ -0.34
LIG1-217ENST00000599165 ARHGAP15Q53QZ3 475 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ANKRD40Q6AI12 368 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 TXNDC11Q6PKC3 985 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 INTS8Q75QN2 995 aaKnown RBP12.95□□□□□ -0.34
LIG1-217ENST00000599165 ELOA2Q8IYF1 753 aaPredicted RBP12.95□□□□□ -0.34
LIG1-217ENST00000599165 FUKQ8N0W3 1084 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ADSSL1Q8N142 457 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 BPIFB1Q8TDL5 484 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 SEMA4DQ92854 862 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ATOH1Q92858 354 aaPredicted RBP12.95□□□□□ -0.34
LIG1-217ENST00000599165 E2F7Q96AV8 911 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 C8orf48Q96LL4 319 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 TTLL2Q9BWV7 592 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 BCO2Q9BYV7 579 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.95□□□□□ -0.341e-14■■■■■ 49.4
LIG1-217ENST00000599165 GTSE1Q9NYZ3 720 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 MAN1B1Q9UKM7 699 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 PIAS3Q9Y6X2 628 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 MYO16Q9Y6X6 1858 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 ATG2BQ96BY7 2078 aa12.95□□□□□ -0.34
LIG1-217ENST00000599165 PTPRZ1P23471 2315 aaPredicted RBP12.94□□□□□ -0.34
LIG1-217ENST00000599165 C2orf78A6NCI8 922 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 SOBPA7XYQ1 873 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 KIF20AO95235 890 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 TAF12Q16514 161 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 SGSM1Q2NKQ1 1148 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 FAM35AQ86V20 835 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 CELF5Q8N6W0 485 aaKnown RBP12.94□□□□□ -0.34
LIG1-217ENST00000599165 ZMIZ2Q8NF64 920 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 WHAMMQ8TF30 809 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 TAF4BQ92750 862 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 GCNAQ96QF7 691 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 CYP2S1Q96SQ9 504 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 KCNK16Q96T55 309 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 FAM83CQ9BQN1 747 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 HPS4Q9NQG7 708 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 CIZ1Q9ULV3 898 aaPredicted RBP12.94□□□□□ -0.34
LIG1-217ENST00000599165 KIAA1549LQ6ZVL6 1849 aa12.94□□□□□ -0.34
LIG1-217ENST00000599165 MYOFQ9NZM1 2061 aa12.93□□□□□ -0.34
LIG1-217ENST00000599165 EP300Q09472 2414 aaPredicted RBP12.93□□□□□ -0.34
LIG1-217ENST00000599165 GOLGA6L4A6NEF3 574 aa12.93□□□□□ -0.34
LIG1-217ENST00000599165 TNFRSF10BO14763 440 aa12.93□□□□□ -0.34
LIG1-217ENST00000599165 BEST1O76090 585 aa12.93□□□□□ -0.34
LIG1-217ENST00000599165 RFX1P22670 979 aa12.93□□□□□ -0.34
LIG1-217ENST00000599165 DDX6P26196 483 aaKnown RBP eCLIP12.93□□□□□ -0.34
LIG1-217ENST00000599165 RPL13P26373 211 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms