RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 MAGEA11P43364 429 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 LHX1P48742 406 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 PSMD2Q13200 908 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 RABEP1Q15276 862 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 SF3A1Q15459 793 aaKnown RBP10.69□□□□□ -0.7
LIG1-209ENST00000596104 SOWAHAQ2M3V2 549 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 C8orf34Q49A92 452 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 L1TD1Q5T7N2 865 aaKnown RBP10.69□□□□□ -0.7
LIG1-209ENST00000596104 FAM171BQ6P995 826 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 C11orf74Q86VG3 221 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 SPATA2LQ8IUW3 424 aaPredicted RBP10.69□□□□□ -0.7
LIG1-209ENST00000596104 SCN4BQ8IWT1 228 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 ADGRF2Q8IZF7 708 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 CSGALNACT2Q8N6G5 542 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 TOP6BLQ8N6T0 577 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 TTC16Q8NEE8 873 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 TSTD1Q8NFU3 115 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 DNAJC19Q96DA6 116 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 EPSTI1Q96J88 318 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 CNOT6LQ96LI5 555 aaKnown RBP10.69□□□□□ -0.7
LIG1-209ENST00000596104 TMEM121BQ9BXQ6 578 aaPredicted RBP10.69□□□□□ -0.7
LIG1-209ENST00000596104 TPSD1Q9BZJ3 242 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 RBAKQ9NYW8 714 aaPredicted RBP10.69□□□□□ -0.7
LIG1-209ENST00000596104 STK17AQ9UEE5 414 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 ITGA11Q9UKX5 1188 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 EXOC7Q9UPT5 735 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 SNX9Q9Y5X1 595 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 FRYQ5TBA9 3013 aa10.69□□□□□ -0.7
LIG1-209ENST00000596104 CACNA1GO43497 2377 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 GOLGA8IPA6NC78 632 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 GOLGA8JA6NMD2 632 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 PATE3B3GLJ2 98 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 ATP2C2O75185 946 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 NFATC1O95644 943 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 HNRNPLP14866 589 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIG1-209ENST00000596104 HDCP19113 662 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 GARTP22102 1010 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 CASP5P51878 434 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 RBP5P82980 135 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 ZNF252P-AS1Q0IIN9 211 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 NR1H3Q13133 447 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 KCNB1Q14721 858 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 USP39Q53GS9 565 aaKnown RBP10.68□□□□□ -0.7
LIG1-209ENST00000596104 SH3PXD2AQ5TCZ1 1133 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 DAB2IPQ5VWQ8 1189 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 ERICH6BQ5W0A0 696 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 ANO7Q6IWH7 933 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 UNQ6494/PRO21346Q6UXR6 183 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 FSIP1Q8NA03 581 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 MDGA1Q8NFP4 955 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 CCDC26Q8TAB7 109 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 OLIG1Q8TAK6 271 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 CACTINQ8WUQ7 758 aaKnown RBP10.68□□□□□ -0.7
LIG1-209ENST00000596104 KBTBD7Q8WVZ9 684 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 SPATA17Q96L03 361 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 ACCSQ96QU6 501 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 CBWD1Q9BRT8 395 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 FGFBP2Q9BYJ0 223 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 MTMR12Q9C0I1 747 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 MRPL44Q9H9J2 332 aaKnown RBP10.68□□□□□ -0.7
LIG1-209ENST00000596104 PDE11AQ9HCR9 933 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 OLFML3Q9NRN5 406 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 TBC1D7Q9P0N9 293 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 MMP17Q9ULZ9 603 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 RALGAPA1Q6GYQ0 2036 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 MYH11P35749 1972 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 SPAG17Q6Q759 2223 aa10.68□□□□□ -0.7
LIG1-209ENST00000596104 PTPRJQ12913 1337 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 FRMD3A2A2Y4 597 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 LEFTY2O00292 366 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 KHNYNO15037 678 aaKnown RBP10.67□□□□□ -0.7
LIG1-209ENST00000596104 GCNT3O95395 438 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 OLFM2O95897 454 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 TOP3BO95985 862 aaKnown RBP10.67□□□□□ -0.7
LIG1-209ENST00000596104 LDHAP00338 332 aaKnown RBP10.67□□□□□ -0.7
LIG1-209ENST00000596104 CYP17A1P05093 508 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 KRT19P08727 400 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 GAP43P17677 238 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 PFKLP17858 780 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 CSRP1P21291 193 aaKnown RBP10.67□□□□□ -0.7
LIG1-209ENST00000596104 LMO2P25791 158 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 SEC13P55735 322 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 USP46P62068 366 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 PSMC1P62191 440 aaKnown RBP10.67□□□□□ -0.7
LIG1-209ENST00000596104 IRX4P78413 519 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 MESP2Q0VG99 397 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 CRY1Q16526 586 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 C2orf27AQ580R0 203 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 VSTM1Q6UX27 236 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 TMEM92Q6UXU6 159 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 DPH6Q7L8W6 267 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 CYP2U1Q7Z449 544 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 BRAPQ7Z569 592 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 SFTPA1Q8IWL2 248 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 CCDC33Q8N5R6 958 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 KIAA1958Q8N8K9 716 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 KDF1Q8NAX2 398 aaPredicted RBP10.67□□□□□ -0.7
LIG1-209ENST00000596104 OR5B17Q8NGF7 314 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 MYLPFQ96A32 169 aa10.67□□□□□ -0.7
LIG1-209ENST00000596104 CEP295NLQ96MC4 621 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms