RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MAN2A1Q16706 1144 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 ZNF394Q53GI3 561 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 PARM1Q6UWI2 310 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 DENND5BQ6ZUT9 1274 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 PAQR9Q6ZVX9 377 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 GAREM2Q75VX8 874 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 FAM35AQ86V20 835 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 SLC44A3Q8N4M1 653 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 C12orf29Q8N999 325 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 RSAD2Q8WXG1 361 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 CYFIP2Q96F07 1278 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 SMARCD1Q96GM5 515 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 HEXIM2Q96MH2 286 aaKnown RBP15.96■□□□□ 0.15
UPF1-202ENST00000594243 TWNKQ96RR1 684 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 SLITRK6Q9H5Y7 841 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 HMGXB4Q9UGU5 601 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 NFE2L3Q9Y4A8 694 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 NUMBLQ9Y6R0 609 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 SOBPA7XYQ1 873 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 F8VP50 259 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 F11P03951 625 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 EEF1GP26641 437 aaKnown RBP15.95■□□□□ 0.14
UPF1-202ENST00000594243 GBP6Q6ZN66 633 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 FUKQ8N0W3 1084 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 PPM1KQ8N3J5 372 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 SLC2A14Q8TDB8 520 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 FGF14Q92915 247 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 FAM81BQ96LP2 452 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 ASB16Q96NS5 453 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 HNRNPABQ99729 332 aaKnown RBP15.95■□□□□ 0.14
UPF1-202ENST00000594243 ARID3AQ99856 593 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 TUBGCP2Q9BSJ2 902 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 NAT10Q9H0A0 1025 aaKnown RBP15.95■□□□□ 0.14
UPF1-202ENST00000594243 TASP1Q9H6P5 420 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 IL21Q9HBE4 155 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 ZFP14Q9HCL3 533 aa15.95■□□□□ 0.14
UPF1-202ENST00000594243 DMAP1Q9NPF5 467 aaPredicted RBP15.95■□□□□ 0.14
UPF1-202ENST00000594243 SAMSN1Q9NSI8 373 aaKnown RBP15.95■□□□□ 0.14
UPF1-202ENST00000594243 GTPBP10A4D1E9 387 aaKnown RBP15.94■□□□□ 0.14
UPF1-202ENST00000594243 KCNJ18B7U540 433 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 ECI2O75521 394 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 AP1G2O75843 785 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 CCDC130P13994 396 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 DDX6P26196 483 aaKnown RBP eCLIP15.94■□□□□ 0.14
UPF1-202ENST00000594243 PPP3CCP48454 512 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 RAD23BP54727 409 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 GCNT1Q02742 428 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 TYRO3Q06418 890 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 SIGLEC14Q08ET2 396 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 KCNJ12Q14500 433 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 SKOR2Q2VWA4 1001 aaPredicted RBP15.94■□□□□ 0.14
UPF1-202ENST00000594243 VWA3BQ502W6 1294 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 HSP90AA4PQ58FG1 418 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 TCP11X2Q5H9J9 407 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 FAM78AQ5JUQ0 283 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 GPR158Q5T848 1215 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 NUP93Q8N1F7 819 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 SLC4A11Q8NBS3 891 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 ZSCAN18Q8TBC5 510 aaPredicted RBP15.94■□□□□ 0.14
UPF1-202ENST00000594243 MRPS31Q92665 395 aaKnown RBP15.94■□□□□ 0.14
UPF1-202ENST00000594243 SMARCD2Q92925 531 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 E2F7Q96AV8 911 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 ELSPBP1Q96BH3 223 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 ZSWIM3Q96MP5 696 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 KCNK16Q96T55 309 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 INTS2Q9H0H0 1204 aaKnown RBP15.94■□□□□ 0.14
UPF1-202ENST00000594243 NDST4Q9H3R1 872 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 TRPV4Q9HBA0 871 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 CSNK1G1Q9HCP0 422 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 FAM49BQ9NUQ9 324 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 COMMD8Q9NX08 183 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 GCNT4Q9P109 453 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 KIAA1257Q9ULG3 409 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 DUSP12Q9UNI6 340 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 NOTCH4Q99466 2003 aa15.94■□□□□ 0.14
UPF1-202ENST00000594243 GPR37L1O60883 481 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 RTN3O95197 1032 aaPredicted RBP15.93■□□□□ 0.14
UPF1-202ENST00000594243 FAM200BP0CF97 657 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 ADORA2BP29275 332 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 WEE1P30291 646 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 CACNA2D1P54289 1103 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 MYL5Q02045 173 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 EXOC3L4Q17RC7 722 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 POTEHQ6S545 545 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 TRIM67Q6ZTA4 783 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 C11orf57Q6ZUT1 292 aaPredicted RBP15.93■□□□□ 0.14
UPF1-202ENST00000594243 RRAGAQ7L523 313 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 ENOSF1Q7L5Y1 443 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 STKLD1Q8NE28 680 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 JAKMIP2Q96AA8 810 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 RPP25Q9BUL9 199 aaKnown RBP15.93■□□□□ 0.14
UPF1-202ENST00000594243 TTLL2Q9BWV7 592 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 KRT82Q9NSB4 513 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 PCDHB4Q9Y5E5 795 aa15.93■□□□□ 0.14
UPF1-202ENST00000594243 C5orf42Q9H799 3197 aa15.92■□□□□ 0.14
UPF1-202ENST00000594243 NRG2O14511 850 aaPredicted RBP15.92■□□□□ 0.14
UPF1-202ENST00000594243 TPM2P07951 284 aa15.92■□□□□ 0.14
UPF1-202ENST00000594243 SRFP11831 508 aa15.92■□□□□ 0.14
UPF1-202ENST00000594243 MAP3K7CLP57077 242 aa15.92■□□□□ 0.14
UPF1-202ENST00000594243 CYP4F8P98187 520 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms