RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ZACNQ401N2 412 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 CBWD6Q4V339 395 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 CBWD3Q5JTY5 395 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 CBWD5Q5RIA9 395 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 SH2D4BQ5SQS7 431 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 VPS52Q8N1B4 723 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 TTPALQ9BTX7 342 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 OLA1Q9NTK5 396 aaKnown RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 THG1LQ9NWX6 298 aaKnown RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 RRN3Q9NYV6 651 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 STK39Q9UEW8 545 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 ADAMTS7Q9UKP4 1686 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 ANKRD36CQ5JPF3 1778 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 OR6C75A6NL08 312 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 OPLAHO14841 1288 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 RGS16O15492 202 aaPredicted RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 SH3BP5O60239 455 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 PAMP19021 973 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 EPHB2P29323 1055 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 SESN3P58005 492 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 C2orf54Q08AI8 447 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 NCAPHQ15003 741 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 TRIM60Q495X7 471 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 MORN1Q5T089 497 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 FOXR2Q6PJQ5 311 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 SLC47A2Q86VL8 602 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 ARHGEF19Q8IW93 802 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 OR5B17Q8NGF7 314 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 PABPC5Q96DU9 382 aaKnown RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 GDAP1L1Q96MZ0 367 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 GAS2L1Q99501 681 aaPredicted RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 ZC4H2Q9NQZ6 224 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 TTLL13PA6NNM8 815 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 H0Y626 953 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 B4GALT4O60513 344 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 CNMDO75829 334 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 HPDP32754 393 aaPredicted RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 GLUD2P49448 558 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 EIF3EP60228 445 aaKnown RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 LRRC55Q6ZSA7 311 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 CENPUQ71F23 418 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 ZC3H18Q86VM9 953 aaKnown RBP10.29□□□□□ -0.76
LIG3-216ENST00000593099 GIPC2Q8TF65 315 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 ZBTB9Q96C00 473 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 SMYD3Q9H7B4 428 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 TMEM161AQ9NX61 479 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 MOSPD1Q9UJG1 213 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 CCDC88AQ3V6T2 1871 aa10.29□□□□□ -0.76
LIG3-216ENST00000593099 A0A087X0T9 212 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ABHD14A-ACY1A0A1B0GW23 586 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 NCK2O43639 380 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 BUB1BO60566 1050 aaPredicted RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 FAM228BP0C875 321 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 DLG4P78352 724 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 DRP2Q13474 957 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 E2F5Q15329 346 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 COBLL1Q53SF7 1204 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 CCDC62Q6P9F0 684 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 UHMK1Q8TAS1 419 aaKnown RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIG3-216ENST00000593099 CNPY3Q9BT09 278 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIG3-216ENST00000593099 KLHL11Q9NVR0 708 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 BAZ2AQ9UIF9 1905 aaKnown RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 VIMP08670 466 aaKnown RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 SYN1P17600 705 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ERCC6LQ2NKX8 1250 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 PCGF5Q86SE9 256 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 UNC45BQ8IWX7 931 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 FBXO22Q8NEZ5 403 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 FAM76AQ8TAV0 307 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 MFSD14AQ96MC6 490 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 OSBPL9Q96SU4 736 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 HINFPQ9BQA5 517 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 KCTD10Q9H3F6 313 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 BFARQ9NZS9 450 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 PACSIN2Q9UNF0 486 aaPredicted RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 DYTNA2CJ06 578 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ADAMTS3O15072 1205 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 CHRNA3P32297 505 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 BRCC3P46736 316 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ADIGQ0VDE8 80 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 MTA1Q13330 715 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 CNKSR3Q6P9H4 555 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ZDHHC17Q8IUH5 632 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 HERC6Q8IVU3 1022 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 EFHBQ8N7U6 833 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 RMDN1Q96DB5 314 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ZFP42Q96MM3 310 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 DNAJC7Q99615 494 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 FZD8Q9H461 694 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 BCAS3Q9H6U6 928 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ALG6Q9Y672 507 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 ZNF865P0CJ78 1059 aaPredicted RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 COMTP21964 271 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 RFC2P35250 354 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 SATB1Q01826 763 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 C1QBPQ07021 282 aaKnown RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 CCDC15Q0P6D6 951 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 PDK1Q15118 436 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms