RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ZBTB6Q15916 424 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 ZMAT2Q96NC0 199 aaKnown RBP20.71■□□□□ 0.91
CLIP3-206ENST00000593074 EIF2AQ9BY44 585 aaKnown RBP20.71■□□□□ 0.91
CLIP3-206ENST00000593074 CXCL16Q9H2A7 254 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 SNTG2Q9NY99 539 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 ZNF148Q9UQR1 794 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 EBAG9O00559 213 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 TREHO43280 583 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 TRAPPC3O43617 180 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 ACSL3O95573 720 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 MMP13P45452 471 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 YARSP54577 528 aaKnown RBP20.7■□□□□ 0.9
CLIP3-206ENST00000593074 AUHQ13825 339 aaKnown RBP20.7■□□□□ 0.9
CLIP3-206ENST00000593074 SMTNL2Q2TAL5 461 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 P3H1Q32P28 736 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 NLRP14Q86W24 1093 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 SLC35B2Q8TB61 432 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 MYCBPAPQ8TBZ2 947 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 IPO4Q8TEX9 1081 aaKnown RBP20.7■□□□□ 0.9
CLIP3-206ENST00000593074 ADAM7Q9H2U9 754 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 ZWILCHQ9H900 591 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 TSPAN16Q9UKR8 245 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 TRIP11Q15643 1979 aa20.7■□□□□ 0.9
CLIP3-206ENST00000593074 SMIM23A6NLE4 172 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 FAM155AB1AL88 458 aaPredicted RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 FAM107AO95990 144 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 AXLP30530 894 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 CDR1P51861 262 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 SEC24CP53992 1094 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 FSCN1Q16658 493 aaKnown RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 PRUNE1Q86TP1 453 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 ZCCHC9Q8N567 271 aaKnown RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 GLIS1Q8NBF1 620 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 UBA3Q8TBC4 463 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 FRMD8P1Q9BZ68 369 aaPredicted RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 MIS12Q9H081 205 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 C17orf102A2RUQ5 167 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 DNALI1O14645 258 aaPredicted RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 PFKMP08237 780 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 AKR1A1P14550 325 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 IFI35P80217 286 aaPredicted RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 ZNF200P98182 395 aaPredicted RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 FAM102AQ5T9C2 384 aaPredicted RBP20.69■□□□□ 0.9
CLIP3-206ENST00000593074 ALKAL1Q6UXT8 129 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 BBS12Q6ZW61 710 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 LRRC52Q8N7C0 313 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 CENPTQ96BT3 561 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 CCT8L2Q96SF2 557 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 NINJ2Q9NZG7 142 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 CNTN3Q9P232 1028 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 TLL2Q9Y6L7 1015 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 SCN1AP35498 2009 aa20.69■□□□□ 0.9
CLIP3-206ENST00000593074 E7EVH7 732 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 GNAT1P11488 350 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 KDELR1P24390 212 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 PCK1P35558 622 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 ZNF143P52747 638 aaPredicted RBP20.68■□□□□ 0.9
CLIP3-206ENST00000593074 KCNT1Q5JUK3 1230 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 CEP128Q6ZU80 1094 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 ZNF473Q8WTR7 871 aaKnown RBP20.68■□□□□ 0.9
CLIP3-206ENST00000593074 PWWP2AQ96N64 755 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 SERPINB12Q96P63 405 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 TRIM6Q9C030 488 aaPredicted RBP20.68■□□□□ 0.9
CLIP3-206ENST00000593074 DNAJC17Q9NVM6 304 aaKnown RBP20.68■□□□□ 0.9
CLIP3-206ENST00000593074 TUBGCP4Q9UGJ1 667 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 PDCD11Q14690 1871 aaKnown RBP20.68■□□□□ 0.9
CLIP3-206ENST00000593074 PPEF2O14830 753 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 TCEA3O75764 348 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 MIPP30301 263 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 SLCO1A2P46721 670 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 ARSEP51690 589 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 SNX17Q15036 470 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 PKDCCQ504Y2 493 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 C7orf31Q8N865 590 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 BEST2Q8NFU1 509 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 CMASQ8NFW8 434 aaPredicted RBP20.68■□□□□ 0.9
CLIP3-206ENST00000593074 HAUS1Q96CS2 278 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 PCDH9Q9HC56 1237 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 PPANQ9NQ55 473 aaKnown RBP20.68■□□□□ 0.9
CLIP3-206ENST00000593074 ASNSD1Q9NWL6 643 aa20.68■□□□□ 0.9
CLIP3-206ENST00000593074 E5RJQ4 531 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 RNF8O76064 485 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 PURAQ00577 322 aaKnown RBP20.67■□□□□ 0.9
CLIP3-206ENST00000593074 KYNUQ16719 465 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 GOLGA7BQ2TAP0 167 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 DPH6Q7L8W6 267 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 NME8Q8N427 588 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 C12orf29Q8N999 325 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 TTC13Q8NBP0 860 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 MRPL45Q9BRJ2 306 aaKnown RBP20.67■□□□□ 0.9
CLIP3-206ENST00000593074 NXF3Q9H4D5 531 aaKnown RBP20.67■□□□□ 0.9
CLIP3-206ENST00000593074 USP18Q9UMW8 372 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 SNX9Q9Y5X1 595 aa20.67■□□□□ 0.9
CLIP3-206ENST00000593074 GMNCA6NCL1 334 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 C2CD4BA6NLJ0 364 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 ZSCAN5DPP0CG00 497 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 CTGFP29279 349 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 TM4SF4P48230 202 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 LONRF1Q17RB8 773 aa20.66■□□□□ 0.9
CLIP3-206ENST00000593074 FAM183BPQ6ZVS7 135 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms