RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CCL16O15467 120 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 GAS2O43903 313 aaKnown RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 USO1O60763 962 aaKnown RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 PRDM1O75626 825 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 DNAJC8O75937 253 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 FGAP02671 866 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 C8AP07357 584 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 NR3C2P08235 984 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 GSTA1P08263 222 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 VSIG8P0DPA2 414 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 CD59P13987 128 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 IDEP14735 1019 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 XBP1P17861 261 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 BCKDHBP21953 392 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ADD2P35612 726 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 CCT6AP40227 531 aaKnown RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 GRM5P41594 1212 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 DNM2P50570 870 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TOB1P50616 345 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 KPNA1P52294 538 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 HAND2P61296 217 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 KRT76Q01546 638 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 SP2Q02086 613 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TLE1Q04724 770 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 PON2Q15165 354 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TTF1Q15361 905 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 ALX1Q15699 326 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 RTN1Q16799 776 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 LACTB2Q53H82 288 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 HSP90AA4PQ58FG1 418 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 DGKKQ5KSL6 1271 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ZNF658Q5TYW1 1059 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 LRCH2Q5VUJ6 765 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 HAUS3Q68CZ6 603 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 PMS2CLQ68D20 193 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 PPP4R3AQ6IN85 833 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TTBK2Q6IQ55 1244 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TMED8Q6PL24 325 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 CCDC121Q6ZUS5 278 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 NLRP14Q86W24 1093 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 NAXDQ8IW45 347 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 FAM114A1Q8IWE2 563 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 SPACA3Q8IXA5 215 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 IFT20Q8IY31 132 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 GALNT15Q8N3T1 639 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 FAM26EQ8N5C1 309 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 MINDY1Q8N5J2 469 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 OR8K1Q8NGG5 319 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TTC8Q8TAM2 541 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 CCHCR1Q8TD31 782 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TTC9Q92623 222 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 GPKOWQ92917 476 aaPredicted RBP eCLIP4.46□□□□□ -1.7
LIG3-211ENST00000588713 NXPE2Q96DL1 559 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 PAGE5Q96GU1 130 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 FAXDC2Q96IV6 333 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ATP6V1G3Q96LB4 118 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 AIFM3Q96NN9 605 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ZIM3Q96PE6 472 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 RMDN3Q96TC7 470 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TRMT61BQ9BVS5 477 aaKnown RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 SLC26A6Q9BXS9 759 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 RNF26Q9BY78 433 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 MRPL9Q9BYD2 267 aaKnown RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 TRIM6Q9C030 488 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 ELAC1Q9H777 363 aaKnown RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 ZNF334Q9HCZ1 680 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 SLC40A1Q9NP59 571 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 BATF3Q9NR55 127 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 KLC4Q9NSK0 619 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 GJB4Q9NTQ9 266 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ZDHHC7Q9NXF8 308 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 MTMR4Q9NYA4 1195 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 TAB2Q9NYJ8 693 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 COL20A1Q9P218 1284 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 EVLQ9UI08 416 aaPredicted RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 ODF2LQ9ULJ1 636 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 GUCA1BQ9UMX6 200 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ST3GAL5Q9UNP4 418 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 NOC2LQ9Y3T9 749 aaKnown RBP4.46□□□□□ -1.7
LIG3-211ENST00000588713 PCNX2A6NKB5 2137 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 ZNF532Q9HCE3 1301 aa4.46□□□□□ -1.7
LIG3-211ENST00000588713 MGAQ8IWI9 3026 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 IGKV6D-41A0A0C4DH26 115 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 TTC26A0AVF1 554 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 GOLGA6L10A6NI86 522 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 B4E1Z4 1266 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 PDE2AO00408 941 aaPredicted RBP4.45□□□□□ -1.7
LIG3-211ENST00000588713 PES1O00541 588 aaKnown RBP4.45□□□□□ -1.7
LIG3-211ENST00000588713 CES2O00748 559 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 LIN7AO14910 233 aaPredicted RBP4.45□□□□□ -1.7
LIG3-211ENST00000588713 PJA2O43164 708 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 TGM5O43548 720 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 LUC7L3O95232 432 aaKnown RBP4.45□□□□□ -1.7
LIG3-211ENST00000588713 MBD4O95243 580 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 LCA5LO95447 670 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 F12P00748 615 aaPredicted RBP4.45□□□□□ -1.7
LIG3-211ENST00000588713 GALTP07902 379 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 PDE6AP16499 860 aa4.45□□□□□ -1.7
LIG3-211ENST00000588713 HNRNPH3P31942 346 aaKnown RBP4.45□□□□□ -1.7
LIG3-211ENST00000588713 KRT2P35908 639 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms