RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 MYL6P60660 151 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 POLR2FP61218 127 aaKnown RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 WDR5P61964 334 aaKnown RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 CCDC173Q0VFZ6 552 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 MYO1EQ12965 1108 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 RAPGEF1Q13905 1077 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 TRIM14Q14142 442 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 SGSM1Q2NKQ1 1148 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 ZNF699Q32M78 642 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 PAN2Q504Q3 1202 aaKnown RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 EPC2Q52LR7 807 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 XKR4Q5GH76 650 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 NOMO2Q5JPE7 1267 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 CLLU1OSQ5K130 101 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 TRIM65Q6PJ69 517 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 TXNDC11Q6PKC3 985 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 ALKAL1Q6UXT8 129 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 C15orf39Q6ZRI6 1047 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 ZNF365Q70YC5 407 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 SND1Q7KZF4 910 aaKnown RBP eCLIP5.69□□□□□ -1.5
LIG3-210ENST00000588109 KLHL23Q8NBE8 558 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 ZNF397Q8NF99 534 aaPredicted RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 CPLX3Q8WVH0 158 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 CCDC74AQ96AQ1 378 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 C18orf25Q96B23 403 aaPredicted RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 IQCDQ96DY2 449 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 HPDLQ96IR7 371 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 ZNF560Q96MR9 790 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 ASB16Q96NS5 453 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 PPP1R10Q96QC0 940 aaKnown RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 ERGIC2Q96RQ1 377 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 PI4K2AQ9BTU6 479 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 MRPL9Q9BYD2 267 aaKnown RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 MTIF3Q9H2K0 278 aaKnown RBP5.69□□□□□ -1.5
LIG3-210ENST00000588109 LIN7BQ9HAP6 207 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 GOLGA2P5Q9HBQ8 144 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 APEX2Q9UBZ4 518 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 AGAP1Q9UPQ3 857 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 SIK3Q9Y2K2 1263 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 LTBP2Q14767 1821 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 MICAL3Q7RTP6 2002 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 TET1Q8NFU7 2136 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 H3BRJ5 948 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 PODXLO00592 558 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 EIF4EBP3O60516 100 aaPredicted RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 ZC3H11AO75152 810 aaKnown RBP eCLIP5.68□□□□□ -1.5
LIG3-210ENST00000588109 VNN1O95497 513 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 ASS1P00966 412 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 CST3P01034 146 aaPredicted RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 P4HA1P13674 534 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TBXAS1P24557 533 aaPredicted RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 ATICP31939 592 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 RPL9P32969 192 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 PBX1P40424 430 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 PNPLA4P41247 253 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 CHRNA4P43681 627 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 OR1G1P47890 313 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TAF6P49848 677 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 GATMP50440 423 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 CLCNKBP51801 687 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 EPHB4P54760 987 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TNNC1P63316 161 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 NOP14P78316 857 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 DEFB103AP81534 67 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 APBA1Q02410 837 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SOX4Q06945 474 aaPredicted RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 TUSC3Q13454 348 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SETDB1Q15047 1291 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 ZBTB6Q15916 424 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 ARHGAP44Q17R89 818 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 WDR72Q3MJ13 1102 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SV2CQ496J9 727 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 ZNF667Q5HYK9 610 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TMEM240Q5SV17 173 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SPOUT1Q5T280 376 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 KLHDC7AQ5VTJ3 777 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 C9orf57Q5W0N0 161 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 IQCEQ6IPM2 695 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SPOPLQ6IQ16 392 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 GJB7Q6PEY0 223 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SHISA2Q6UWI4 295 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 C16orf59Q7L2K0 433 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 RRAGAQ7L523 313 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TMCO2Q7Z6W1 182 aaPredicted RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 LRRC43Q8N309 656 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TMEM130Q8N3G9 435 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 PPM1KQ8N3J5 372 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 LRRC52Q8N7C0 313 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 GSTCDQ8NEC7 633 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 RSPH1Q8WYR4 309 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TAF4BQ92750 862 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SEMA4DQ92854 862 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TOP1MTQ969P6 601 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 ELMO3Q96BJ8 720 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 VWCEQ96DN2 955 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 FAM81BQ96LP2 452 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 UROC1Q96N76 676 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 HHIPQ96QV1 700 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SPAG5Q96R06 1193 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 MMS19Q96T76 1030 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms