RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	HOXA7	P31268	230 aa	Predicted RBP	5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	BPIFB4	P59827	614 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	PPARA	Q07869	468 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	HLTF	Q14527	1009 aa	Known RBP eCLIP	5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	CRY1	Q16526	586 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	SHROOM1	Q2M3G4	852 aa	Predicted RBP	5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	MCMDC2	Q4G0Z9	681 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	GAGE13	Q4V321	117 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	C16orf59	Q7L2K0	433 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	ANKRD53	Q8N9V6	530 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	BEND2	Q8NDZ0	799 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	GPRC5A	Q8NFJ5	357 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	SOCS4	Q8WXH5	440 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	C12orf42	Q96LP6	360 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	GPHA2	Q96T91	129 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	SEC62	Q99442	399 aa	Known RBP	5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	TRIM55	Q9BYV6	548 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	ARHGAP39	Q9C0H5	1083 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	RPAP3	Q9H6T3	665 aa	Predicted RBP	5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	KANSL2	Q9H9L4	492 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	MAP3K20	Q9NYL2	800 aa	Known RBP	5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	SIRPG	Q9P1W8	387 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	CCDC171	Q6TFL3	1326 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	ADGRA2	Q96PE1	1338 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792	ZSWIM8	A7E2V4	1837 aa		5.39	□□□□□ -1.55
ZNF540-204	ENST00000586792		A0A0D9SFI3	127 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	CFAP69	A5D8W1	941 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	AQP7	O14520	342 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	WDR46	O15213	610 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	RANBP6	O60518	1105 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	PRDM1	O75626	825 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	EEF2	P13639	858 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	KRT15	P19012	456 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	SDS	P20132	328 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	MAPK4	P31152	587 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	CLK3	P49761	638 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	PRKCZ	Q05513	592 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	IK	Q13123	557 aa	Predicted RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	SERINC3	Q13530	473 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	RAPGEF1	Q13905	1077 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	PLS1	Q14651	629 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	COG2	Q14746	738 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	MAPRE1	Q15691	268 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	ERCC6L	Q2NKX8	1250 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	RRP12	Q5JTH9	1297 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	NAIF1	Q69YI7	327 aa	Predicted RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	CASC1	Q6TDU7	716 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	CWC27	Q6UX04	472 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	CCDC129	Q6ZRS4	1044 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	ZC3H7A	Q8IWR0	971 aa	Known RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	SPICE1	Q8N0Z3	855 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	MB21D1	Q8N884	522 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	MDGA1	Q8NFP4	955 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	ACER1	Q8TDN7	264 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	SH3TC2	Q8TF17	1288 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	RUFY2	Q8WXA3	655 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	PGBD4	Q96DM1	585 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	RNF41	Q9H4P4	317 aa	Predicted RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	VCPKMT	Q9H867	229 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	IL23A	Q9NPF7	189 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	FANCL	Q9NW38	375 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	HOXC10	Q9NYD6	342 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	SAE1	Q9UBE0	346 aa	Predicted RBP	5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	MORF4L1	Q9UBU8	362 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	STX8	Q9UNK0	236 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	TMX2	Q9Y320	296 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	INSL6	Q9Y581	213 aa		5.38	□□□□□ -1.55
ZNF540-204	ENST00000586792	RBBP6	Q7Z6E9	1792 aa	Known RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	ZNF213	O14771	459 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	ADCY3	O60266	1144 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	TTLL1	O95922	423 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	PC	P11498	1178 aa	Known RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	NAT1	P18440	290 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	LAG3	P18627	525 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	RGS2	P41220	211 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	FLT3LG	P49771	235 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	EXOSC10	Q01780	885 aa	Known RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	ACAP1	Q15027	740 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	IMMT	Q16891	758 aa	Known RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	TTC22	Q5TAA0	569 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	ICE2	Q659A1	982 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	FBXO42	Q6P3S6	717 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	CATSPERG	Q6ZRH7	1159 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	MFSD6	Q6ZSS7	791 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	CENPQ	Q7L2Z9	268 aa	Predicted RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	MTDH	Q86UE4	582 aa	Known RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	HOMER1	Q86YM7	354 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	DRC7	Q8IY82	874 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	ELOA2	Q8IYF1	753 aa	Predicted RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	BCL6B	Q8N143	479 aa	Predicted RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	LRRC47	Q8N1G4	583 aa	Known RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	HIPK4	Q8NE63	616 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	ZNF333	Q96JL9	665 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	FAM227B	Q96M60	508 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	FAM193B	Q96PV7	902 aa	Predicted RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	P2RX7	Q99572	595 aa	Known RBP	5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	CASS4	Q9NQ75	786 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	SLC5A4	Q9NY91	659 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	CLIP2	Q9UDT6	1046 aa		5.37	□□□□□ -1.55
ZNF540-204	ENST00000586792	CTNNA3	Q9UI47	895 aa		5.37	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms