RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CELF5Q8N6W0 485 aaKnown RBP11.58□□□□□ -0.56
CLIP3-203ENST00000586457 MAB21L3Q8N8X9 362 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 TAS1R2Q8TE23 839 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 FAM122AQ96E09 287 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 SPATA17Q96L03 361 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 SLITRK1Q96PX8 696 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 NT5C1AQ9BXI3 368 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 LRRC3Q9BY71 257 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 NIF3L1Q9GZT8 377 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 GZF1Q9H116 711 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-203ENST00000586457 ZNF334Q9HCZ1 680 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-203ENST00000586457 DACH1Q9UI36 760 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 SIT1Q9Y3P8 196 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 TRAV19A0A0A6YYK7 116 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 SOBPA7XYQ1 873 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 RTN3O95197 1032 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 PDGFBP01127 241 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 CKMP06732 381 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 USP17L7P0C7H9 530 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 KPNA1P52294 538 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 NUBP1P53384 320 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 STX17P56962 302 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 UBXN2BQ14CS0 331 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 MLF2Q15773 248 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 SPOPLQ6IQ16 392 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 ZNF852Q6ZMS4 543 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 CMTM8Q8IZV2 173 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 NUP93Q8N1F7 819 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 STKLD1Q8NE28 680 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 ELMO3Q96BJ8 720 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 TRMT2BQ96GJ1 504 aaKnown RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 SMARCD1Q96GM5 515 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 C8orf48Q96LL4 319 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 HEXIM2Q96MH2 286 aaKnown RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 NELL2Q99435 816 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 PKMYT1Q99640 499 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 SRRTQ9BXP5 876 aaKnown RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 B3GNT5Q9BYG0 378 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 PLA2G2FQ9BZM2 168 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 NUP62CLQ9H1M0 184 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 DPEP3Q9H4B8 488 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 TBC1D17Q9HA65 648 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 TRPV4Q9HBA0 871 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 RAPGEFL1Q9UHV5 662 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 ARIH1Q9Y4X5 557 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-203ENST00000586457 MUC3AQ02505 3323 aa11.57□□□□□ -0.56
CLIP3-203ENST00000586457 PPP1R3GB7ZBB8 358 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 F8VP50 259 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 CLDN5O00501 218 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 MAN2B1O00754 1011 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 MOSPD3O75425 235 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 AP1G2O75843 785 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 NOL4O94818 638 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 CD44P16070 742 aaKnown RBP11.56□□□□□ -0.56
CLIP3-203ENST00000586457 HMGA1P17096 107 aaKnown RBP11.56□□□□□ -0.56
CLIP3-203ENST00000586457 HDCP19113 662 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 YWHAQP27348 245 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 PMS1P54277 932 aaKnown RBP11.56□□□□□ -0.56
CLIP3-203ENST00000586457 PLCB2Q00722 1185 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 ARHGAP29Q52LW3 1261 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 C1orf220Q5T0J3 134 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 STXBP5Q5T5C0 1151 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 TXNDC8Q6A555 127 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 PHLDB3Q6NSJ2 640 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 VITQ6UXI7 678 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 MON1AQ86VX9 555 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 CRYBG2Q8N1P7 616 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 MLKLQ8NB16 471 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 BPIFB1Q8TDL5 484 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 DNASE1L2Q92874 299 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 EXOC4Q96A65 974 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 FAXDC2Q96IV6 333 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 MYRFLQ96LU7 910 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 SLC46A2Q9BY10 475 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 ZNF518BQ9C0D4 1074 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 NACA2Q9H009 215 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 DMAP1Q9NPF5 467 aaPredicted RBP11.56□□□□□ -0.56
CLIP3-203ENST00000586457 TDP1Q9NUW8 608 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLIP3-203ENST00000586457 TSC2P49815 1807 aa11.56□□□□□ -0.56
CLIP3-203ENST00000586457 KANSL1LA0AUZ9 987 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 KRBA1A5PL33 1030 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 FAM170BA6NMN3 283 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 CHADO15335 359 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 F11P03951 625 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 FAM200BP0CF97 657 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 AOC1P19801 751 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 TBXAS1P24557 533 aaPredicted RBP11.55□□□□□ -0.56
CLIP3-203ENST00000586457 ADORA2BP29275 332 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 ASPAP45381 313 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 PTPN5P54829 565 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 AMPD2Q01433 879 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 LRMPQ12912 555 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 ORC1Q13415 861 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 CCDC142Q17RM4 750 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 ZNF394Q53GI3 561 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 C1orf228Q6PIY5 440 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 TPRG1Q6ZUI0 275 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 PDZD8Q8NEN9 1154 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 SLC2A14Q8TDB8 520 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms