RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 GARTP22102 1010 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 BDNFP23560 247 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 HOXD13P35453 343 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 PNPLA4P41247 253 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 SEC13P55735 322 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 RPL10AP62906 217 aaKnown RBP12.46□□□□□ -0.41
LIG3-207ENST00000586119 RBP5P82980 135 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 MYL7Q01449 175 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 RESTQ13127 1097 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 DMC1Q14565 340 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 ZNF268Q14587 947 aaPredicted RBP12.46□□□□□ -0.41
LIG3-207ENST00000586119 PDGFRLQ15198 375 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 GAB4Q2WGN9 574 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 IL31Q6EBC2 164 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 CBWD2Q8IUF1 395 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 SPATA2LQ8IUW3 424 aaPredicted RBP12.46□□□□□ -0.41
LIG3-207ENST00000586119 SYCP3Q8IZU3 236 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 CACTINQ8WUQ7 758 aaKnown RBP12.46□□□□□ -0.41
LIG3-207ENST00000586119 LEO1Q8WVC0 666 aaPredicted RBP12.46□□□□□ -0.41
LIG3-207ENST00000586119 CD101Q93033 1021 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 LOXL4Q96JB6 756 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 ZC3H10Q96K80 434 aaKnown RBP12.46□□□□□ -0.41
LIG3-207ENST00000586119 RNF38Q9H0F5 515 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 KIF9Q9HAQ2 790 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 PANK4Q9NVE7 773 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 GDAP2Q9NXN4 497 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 STK17AQ9UEE5 414 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 RALYQ9UKM9 306 aaKnown RBP12.46□□□□□ -0.41
LIG3-207ENST00000586119 EXOC7Q9UPT5 735 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 TRAV19A0A0A6YYK7 116 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 FRMD3A2A2Y4 597 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 K7EQS6 105 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 GIPC1O14908 333 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 CST3P01034 146 aaPredicted RBP12.45□□□□□ -0.42
LIG3-207ENST00000586119 CKMP06732 381 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 USP17L7P0C7H9 530 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 HNRNPLP14866 589 aaKnown RBP eCLIP12.45□□□□□ -0.42
LIG3-207ENST00000586119 GAP43P17677 238 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 HDCP19113 662 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 ABCD1P33897 745 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 MPLP40238 635 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 OPRD1P41143 372 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 SLC6A11P48066 632 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 IFNAR2P48551 515 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 MESP2Q0VG99 397 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 USP4Q13107 963 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 C2orf27AQ580R0 203 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 SYT13Q7L8C5 426 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 LIMS2Q7Z4I7 341 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 TMEM86AQ8N2M4 240 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 CAMKK1Q8N5S9 505 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 TOP6BLQ8N6T0 577 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 LRRC52Q8N7C0 313 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 PDILTQ8N807 584 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 MYLPFQ96A32 169 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 TRMT2BQ96GJ1 504 aaKnown RBP12.45□□□□□ -0.42
LIG3-207ENST00000586119 USP28Q96RU2 1077 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 SYT15Q9BQS2 421 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 TPSD1Q9BZJ3 242 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 ABCB6Q9NP58 842 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 FOXD4L1Q9NU39 408 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 INTS13Q9NVM9 706 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 SEL1LQ9UBV2 794 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 ZMYM5Q9UJ78 669 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 ITGA11Q9UKX5 1188 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 PCDHB13Q9Y5F0 798 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 LAMA1P25391 3075 aa12.45□□□□□ -0.42
LIG3-207ENST00000586119 SOBPA7XYQ1 873 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 K7ELQ4 463 aaPredicted RBP12.44□□□□□ -0.42
LIG3-207ENST00000586119 LDHAP00338 332 aaKnown RBP12.44□□□□□ -0.42
LIG3-207ENST00000586119 TMEM191BP0C7N4 346 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 SYT1P21579 422 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 BCKDHBP21953 392 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 PMLP29590 882 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 LHX1P48742 406 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 DGKEP52429 567 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 LIMK1P53667 647 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 CACNA2D1P54289 1103 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 CREB5Q02930 508 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 CUL4AQ13619 759 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 CFAP221Q4G0U5 840 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 EMC10Q5UCC4 262 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 HSCBQ8IWL3 235 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 GPD1LQ8N335 351 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 CPA6Q8N4T0 437 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 CCDC33Q8N5R6 958 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 FRMD1Q8N878 549 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 RDH13Q8NBN7 331 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 ELMO3Q96BJ8 720 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 HPDLQ96IR7 371 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 MRPL45Q9BRJ2 306 aaKnown RBP12.44□□□□□ -0.42
LIG3-207ENST00000586119 LSM14BQ9BX40 385 aaKnown RBP12.44□□□□□ -0.42
LIG3-207ENST00000586119 ZDHHC4Q9NPG8 344 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 OLFML3Q9NRN5 406 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 TMEM30AQ9NV96 361 aa12.44□□□□□ -0.42
LIG3-207ENST00000586119 MAGEC2Q9UBF1 373 aaPredicted RBP12.44□□□□□ -0.42
LIG3-207ENST00000586119 UXTQ9UBK9 157 aaPredicted RBP12.44□□□□□ -0.42
LIG3-207ENST00000586119 PI4KAP42356 2102 aa12.43□□□□□ -0.42
LIG3-207ENST00000586119 PATE3B3GLJ2 98 aa12.43□□□□□ -0.42
LIG3-207ENST00000586119 LEFTY2O00292 366 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms