RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	IL2RB	P14784	551 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	EGR1	P18146	543 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	RPS6KB1	P23443	525 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	KLRC1	P26715	233 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	SLC6A4	P31645	630 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	ATIC	P31939	592 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	KCNQ1	P51787	676 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	ATXN1	P54253	815 aa	Known RBP	5.51	□□□□□ -1.53
SS18-223	ENST00000583595	POLE2	P56282	527 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	GNAI1	P63096	354 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	ADAM15	Q13444	863 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	MEA1	Q16626	185 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	FAM133B	Q5BKY9	247 aa	Known RBP	5.51	□□□□□ -1.53
SS18-223	ENST00000583595	ARL6IP4	Q66PJ3	421 aa	Known RBP	5.51	□□□□□ -1.53
SS18-223	ENST00000583595	ACAD10	Q6JQN1	1059 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	GLB1L	Q6UWU2	654 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	BRINP3	Q76B58	766 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	LIMS2	Q7Z4I7	341 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	PLEKHH3	Q7Z736	793 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	USP37	Q86T82	979 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	GGN	Q86UU5	652 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	SLC44A2	Q8IWA5	706 aa	Predicted RBP	5.51	□□□□□ -1.53
SS18-223	ENST00000583595	CCDC28A	Q8IWP9	274 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	YAF2	Q8IY57	180 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	KLHL36	Q8N4N3	616 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	TTC30B	Q8N4P2	665 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	NUDT10	Q8NFP7	164 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	OR6Y1	Q8NGX8	325 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	ZNF384	Q8TF68	577 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	CASKIN2	Q8WXE0	1202 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	NELL1	Q92832	810 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	SPSB4	Q96A44	273 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	NUDT11	Q96G61	164 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	LOXL4	Q96JB6	756 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	LMAN2L	Q9H0V9	348 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	CHODL	Q9H9P2	273 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	BARX1	Q9HBU1	254 aa	Predicted RBP	5.51	□□□□□ -1.53
SS18-223	ENST00000583595	NKIRAS2	Q9NYR9	191 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	AGAP1	Q9UPQ3	857 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	SMARCA4	P51532	1647 aa		5.51	□□□□□ -1.53
SS18-223	ENST00000583595	BAZ1B	Q9UIG0	1483 aa	Known RBP	5.51	□□□□□ -1.53
SS18-223	ENST00000583595		H0Y3Z8	333 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595		H7C4K7	107 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	B4GALT4	O60513	344 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	SLC43A1	O75387	559 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	IDE	P14735	1019 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	ANP32A	P39687	249 aa	Known RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	NPTX2	P47972	431 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	ACTR2	P61160	394 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	SCAP	Q12770	1279 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	TST	Q16762	297 aa	Known RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CRB2	Q5IJ48	1285 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	PLAG1	Q6DJT9	500 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	ENOSF1	Q7L5Y1	443 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	ZNF572	Q7Z3I7	529 aa	Predicted RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CLEC14A	Q86T13	490 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CHD1L	Q86WJ1	897 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	KBTBD2	Q8IY47	623 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	PLA2G15	Q8NCC3	412 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CPT1C	Q8TCG5	803 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	THAP4	Q8WY91	577 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CEP95	Q96GE4	821 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	GPR20	Q99678	358 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	RTKN	Q9BST9	563 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	SSBP3	Q9BWW4	388 aa	Predicted RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	GPR63	Q9BZJ6	419 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	GHITM	Q9H3K2	345 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	HEYL	Q9NQ87	328 aa	Predicted RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	XPR1	Q9UBH6	696 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CNPY2	Q9Y2B0	182 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	DTNA	Q9Y4J8	743 aa		5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CTDP1	Q9Y5B0	961 aa	Predicted RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	5.5	□□□□□ -1.53
SS18-223	ENST00000583595	CENPJ	Q9HC77	1338 aa	Predicted RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595		F5H0A9	414 aa	Predicted RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	SPTLC2	O15270	562 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	KNG1	P01042	644 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CHGB	P05060	677 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	HNRNPA1	P09651	372 aa	Known RBP eCLIP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	SRGAP2B	P0DMP2	458 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	MTHFD1	P11586	935 aa	Known RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	INSRR	P14616	1297 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	KLRK1	P26718	216 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	POLD1	P28340	1107 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CASR	P41180	1078 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	KIR2DL3	P43628	341 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	POLD2	P49005	469 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CLNS1A	P54105	237 aa	Known RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	DRG2	P55039	364 aa	Known RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	PPP2CB	P62714	309 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	VAMP2	P63027	116 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	PPP2CA	P67775	309 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	POU6F2	P78424	691 aa	Predicted RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	ZBED6	P86452	979 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CALD1	Q05682	793 aa	Known RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	SP140	Q13342	867 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	MYBPC2	Q14324	1141 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	KCNAB1	Q14722	419 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	EIF4H	Q15056	248 aa	Known RBP	5.49	□□□□□ -1.53

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