RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 IPCEF1Q8WWN9 437 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 TRIM43Q96BQ3 446 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 RIPOR3Q96MK2 946 aa4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 HEPHQ9BQS7 1158 aa4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 CNPPD1Q9BV87 410 aa4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 GSTO2Q9H4Y5 243 aa4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 MTMR4Q9NYA4 1195 aa4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 POGKQ9P215 609 aa4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 DAAM1Q9Y4D1 1078 aa4.53□□□□□ -1.68
SMCHD1-209ENST00000583441 PNPLA7Q6ZV29 1317 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 LOC102724159A0A0B4J2E5 919 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 ABHD14A-ACY1A0A1B0GW23 586 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 CDHR4A6H8M9 788 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 MBD3L4A6NDZ8 208 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 MBD3L3A6NE82 208 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 POM121BA6NF01 834 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 MANSC4A6NHS7 340 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 ZNF785A8K8V0 405 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 MYO1CO00159 1063 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 BTN3A1O00481 513 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 KPNA5O15131 536 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 PARP1P09874 1014 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 XRCC6P12956 609 aaKnown RBP eCLIP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 TSHRP16473 764 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 HDCP19113 662 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 TNFSF4P23510 183 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 SLC6A4P31645 630 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 POLGP54098 1239 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 PIGFQ07326 219 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 PWP2Q15269 919 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 GRAMD1BQ3KR37 738 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 AMOTQ4VCS5 1084 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 UTP14CQ5TAP6 766 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 XRRA1Q6P2D8 792 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 C1orf228Q6PIY5 440 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 MYLK4Q86YV6 388 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 SDR16C5Q8N3Y7 309 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 CELF5Q8N6W0 485 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 RNF169Q8NCN4 708 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 TBC1D15Q8TC07 691 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 BRI3BPQ8WY22 251 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 DPF1Q92782 380 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 RPL36ALQ969Q0 106 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 MOGAT1Q96PD6 335 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 P2RX7Q99572 595 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 EIF2AQ9BY44 585 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 TINAGL1Q9GZM7 467 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 CERS4Q9HA82 394 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 IL17RBQ9NRM6 502 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 SACM1LQ9NTJ5 587 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 FBXO34Q9NWN3 711 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 CPNE7Q9UBL6 633 aa4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.52□□□□□ -1.69
SMCHD1-209ENST00000583441 CCDC187A0A096LP49 1063 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 INSIG1O15503 277 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 CDKL5O76039 1030 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 AGFG2O95081 481 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 GRPP07492 148 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 CYP2C9P11712 490 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 GCSHP23434 173 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 KLRC1P26715 233 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 SERPINB3P29508 390 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 ZNF135P52742 658 aaPredicted RBP4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 WNT3P56703 355 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 PSMC1P62191 440 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 TUBA4AP68366 448 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 SATB1Q01826 763 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 TCF15Q12870 199 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 STK3Q13188 491 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 C10orf62Q5T681 223 aaPredicted RBP4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 MED25Q71SY5 747 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 BEND5Q7L4P6 421 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 SESTD1Q86VW0 696 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 CCDC33Q8N5R6 958 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 ACTRT2Q8TDY3 377 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 HASPINQ8TF76 798 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 IQCDQ96DY2 449 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 PDLIM2Q96JY6 352 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 ARPC5LQ9BPX5 153 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 A1CFQ9NQ94 594 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 TRMT13Q9NUP7 481 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 LRCH1Q9Y2L9 728 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 NEU2Q9Y3R4 380 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 FPGT-TNNI3KV9GXZ4 949 aa4.51□□□□□ -1.69
SMCHD1-209ENST00000583441 A0A087WWL8 130 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 PRSS29PA6NIE9 313 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 DRGXA6NNA5 263 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 THAP12O43422 761 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 SOAT2O75908 522 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 UNC5CO95185 931 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 ANXA2P07355 339 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 PIM1P11309 404 aaPredicted RBP4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 CKBP12277 381 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 VIPR2P41587 438 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 PHKA1P46020 1223 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 SSBP2P81877 361 aaPredicted RBP4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 ZNF844Q08AG5 666 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 CHAF1AQ13111 956 aaPredicted RBP4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 ZRSR2Q15696 482 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 ETFDHQ16134 617 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms