RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 RPP40O75818 363 aaKnown RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 AKAP3O75969 853 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 PRPF6O94906 941 aaKnown RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 EGFP01133 1207 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 KRT19P08727 400 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 TMEM191BP0C7N4 346 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 ZNF806P0C7X5 589 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 MAGEA11P43364 429 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 FOXC1Q12948 553 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 MYO1EQ12965 1108 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 MTF1Q14872 753 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 SURF1Q15526 300 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 ZNF77Q15935 545 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 DUOXA2Q1HG44 320 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 VSTM1Q6UX27 236 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 CACNA2D4Q7Z3S7 1137 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 SPATA2LQ8IUW3 424 aaPredicted RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 CCDC65Q8IXS2 484 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 CPA6Q8N4T0 437 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 FSIP1Q8NA03 581 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 KDF1Q8NAX2 398 aaPredicted RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 STKLD1Q8NE28 680 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 OSCP1Q8WVF1 389 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 INTS4Q96HW7 963 aaKnown RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 HPDLQ96IR7 371 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 ZC3H10Q96K80 434 aaKnown RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 FAM84AQ96KN4 292 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 USP28Q96RU2 1077 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 SLC22A12Q96S37 553 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 MTMR12Q9C0I1 747 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 DUS2Q9NX74 493 aaKnown RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 GCNT4Q9P109 453 aa11.36□□□□□ -0.59
RFFL-209ENST00000581265 KIF26AQ9ULI4 1882 aaPredicted RBP11.36□□□□□ -0.59
RFFL-209ENST00000581265 SPAG17Q6Q759 2223 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 TRAV19A0A0A6YYK7 116 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 HCRTO43612 131 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 RNF40O75150 1001 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 ATP2C2O75185 946 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 CKMP06732 381 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 CENPBP07199 599 aaPredicted RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 TCF3P15923 654 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 PFKLP17858 780 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 HDCP19113 662 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 LMO2P25791 158 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 PXNP49023 591 aaPredicted RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 NASPP49321 788 aaPredicted RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 SF3A2Q15428 464 aaKnown RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 MAPRE1Q15691 268 aaKnown RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 CCDC142Q17RM4 750 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 EML3Q32P44 896 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 STPG1Q5TH74 334 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 PSAPL1Q6NUJ1 521 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 C4orf50Q6ZRC1 276 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 STXBP4Q6ZWJ1 553 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 SYT13Q7L8C5 426 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 KBTBD6Q86V97 674 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 SCN4BQ8IWT1 228 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 OR5B17Q8NGF7 314 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 KBTBD7Q8WVZ9 684 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 ATP2A3Q93084 1043 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 ANKRD36BP1Q96IX9 119 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 SPATA17Q96L03 361 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 LRRC27Q9C0I9 530 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 ARRDC1-AS1Q9H2J1 176 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 ZSCAN16Q9H4T2 348 aaPredicted RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 KIAA1586Q9HCI6 787 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 TRPC7Q9HCX4 862 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 KBTBD4Q9NVX7 518 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 MAGEC2Q9UBF1 373 aaPredicted RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 CDH9Q9ULB4 789 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 MTMR6Q9Y217 621 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 R3HCC1Q9Y3T6 440 aaKnown RBP11.35□□□□□ -0.59
RFFL-209ENST00000581265 PCDHGA5Q9Y5G8 931 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 PTPRJQ12913 1337 aa11.35□□□□□ -0.59
RFFL-209ENST00000581265 ZNF638Q14966 1978 aaKnown RBP11.34□□□□□ -0.59
RFFL-209ENST00000581265 TM4SF5O14894 197 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 EPN2O95208 641 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 TNNC2P02585 160 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 FAM163BP0C2L3 166 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 HOXD13P35453 343 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 RING1Q06587 406 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 USP4Q13107 963 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 NR1H3Q13133 447 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 E2F4Q16254 413 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 PLA2G2CQ5R387 149 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 LMBRD2Q68DH5 695 aaPredicted RBP11.34□□□□□ -0.59
RFFL-209ENST00000581265 NAIF1Q69YI7 327 aaPredicted RBP11.34□□□□□ -0.59
RFFL-209ENST00000581265 CBWD2Q8IUF1 395 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 WDR49Q8IV35 697 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 PDILTQ8N807 584 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 KIAA1958Q8N8K9 716 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 ARL14EPQ8N8R7 260 aaPredicted RBP11.34□□□□□ -0.59
RFFL-209ENST00000581265 GLIS3Q8NEA6 775 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 SH3RF2Q8TEC5 729 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 NOC3LQ8WTT2 800 aaKnown RBP11.34□□□□□ -0.59
RFFL-209ENST00000581265 EZH1Q92800 747 aaPredicted RBP11.34□□□□□ -0.59
RFFL-209ENST00000581265 CD101Q93033 1021 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 SYT15Q9BQS2 421 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 TRIM9Q9C026 710 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 TNMDQ9H2S6 317 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms