RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MDH1BQ5I0G3 518 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 DAB2IPQ5VWQ8 1189 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 OR6B2Q6IFH4 312 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 FAM183BPQ6ZVS7 135 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ZNF280BQ86YH2 543 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 MMGT1Q8N4V1 131 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 GPR161Q8N6U8 529 aaKnown RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 ANKRD52Q8NB46 1076 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 B3GALNT2Q8NCR0 500 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 JOSD2Q8TAC2 188 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 SLC2A14Q8TDB8 520 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 HASPINQ8TF76 798 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 UBE2Q2Q8WVN8 375 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 APBB2Q92870 758 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 MCRS1Q96EZ8 462 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 TNIP3Q96KP6 325 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 TOX2Q96NM4 488 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.1□□□□□ -0.63
SS18-217ENST00000580958 SLC4A5Q9BY07 1137 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 CARD9Q9H257 536 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ANKZF1Q9H8Y5 726 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ST7Q9NRC1 585 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 RBM12Q9NTZ6 932 aaKnown RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 TBC1D13Q9NVG8 400 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 TMEM161AQ9NX61 479 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 DDX43Q9NXZ2 648 aaKnown RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 PCDHA3Q9Y5H8 950 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 MYO16Q9Y6X6 1858 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ZNF638Q14966 1978 aaKnown RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 PTPRSQ13332 1948 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 CCDC66A2RUB6 948 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 SIGLEC16A6NMB1 481 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 E5RJQ4 531 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 F8W810 466 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 B3GAT3O94766 335 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 DDHD2O94830 711 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 CXCL10P02778 98 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 TKTP29401 623 aaKnown RBP11.09□□□□□ -0.63
SS18-217ENST00000580958 LHX1P48742 406 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 BCAT1P54687 386 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 TAS2R40P59535 323 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 DSC1Q08554 894 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 BST2Q10589 180 aaKnown RBP11.09□□□□□ -0.63
SS18-217ENST00000580958 VARS2Q5ST30 1063 aaKnown RBP11.09□□□□□ -0.63
SS18-217ENST00000580958 SEL1L2Q5TEA6 688 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 C1orf53Q5VUE5 145 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 KIAA0319Q5VV43 1072 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 AADACL2Q6P093 401 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 PMF1Q6P1K2 205 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 DCLRE1AQ6PJP8 1040 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 DEFB128Q7Z7B8 93 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 METTL23Q86XA0 190 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 ANKLE1Q8NAG6 615 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.09□□□□□ -0.63
SS18-217ENST00000580958 SLC35F5Q8WV83 523 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 RSPH1Q8WYR4 309 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 RNPC3Q96LT9 517 aaKnown RBP11.09□□□□□ -0.63
SS18-217ENST00000580958 FAM193BQ96PV7 902 aaPredicted RBP11.09□□□□□ -0.63
SS18-217ENST00000580958 SYT15Q9BQS2 421 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 MED10Q9BTT4 135 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 ELAC1Q9H777 363 aaKnown RBP11.09□□□□□ -0.63
SS18-217ENST00000580958 CRTAC1Q9NQ79 661 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 TBX21Q9UL17 535 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 LRFN2Q9ULH4 789 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 PCDHB7Q9Y5E2 793 aa11.09□□□□□ -0.63
SS18-217ENST00000580958 BRCA2P51587 3418 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 KIAA1671Q9BY89 1806 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 M0QZQ0 153 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 CLDN5O00501 218 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 PSTPIP1O43586 416 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 FGGP02679 453 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 ITGB1P05556 798 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 PYGMP11217 842 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 KRT3P12035 628 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 PAX3P23760 479 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 PSMA2P25787 234 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 RFC1P35251 1148 aaPredicted RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 GJC1P36383 396 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 SSR1P43307 286 aaKnown RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 GJA8P48165 433 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 RWDD2BP57060 319 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 RNASELQ05823 741 aaKnown RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 PKN2Q16513 984 aaKnown RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 LONRF2Q1L5Z9 754 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 FAM102AQ5T9C2 384 aaPredicted RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 CC2D1AQ6P1N0 951 aaPredicted RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 COLGALT2Q8IYK4 626 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 FUKQ8N0W3 1084 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 EMC1Q8N766 993 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 SPATA18Q8TC71 538 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 PAWRQ96IZ0 340 aaKnown RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 SUSD3Q96L08 255 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 PNKPQ96T60 521 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 HNRNPABQ99729 332 aaKnown RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 RTP3Q9BQQ7 232 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 B3GNT5Q9BYG0 378 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 PARD6BQ9BYG5 372 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 MIS12Q9H081 205 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 C11orf49Q9H6J7 331 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms