RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SECISBP2LQ93073 1101 aaKnown RBP11.36□□□□□ -0.59
SS18-213ENST00000579640 CLSTN3Q9BQT9 956 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 UBXN6Q9BZV1 441 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 NKX2-4Q9H2Z4 354 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 NGRNQ9NPE2 291 aaKnown RBP11.36□□□□□ -0.59
SS18-213ENST00000579640 TLR9Q9NR96 1032 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 KCND1Q9NSA2 647 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 KRT82Q9NSB4 513 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 TMLHEQ9NVH6 421 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 MAFFQ9ULX9 164 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 REXO2Q9Y3B8 237 aaKnown RBP11.36□□□□□ -0.59
SS18-213ENST00000579640 PCDHB5Q9Y5E4 795 aa11.36□□□□□ -0.59
SS18-213ENST00000579640 GOLGA6L9A6NEM1 432 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 TMCO5BA8MYB1 307 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 H3BNC9 293 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 C2CD2LO14523 706 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 XPO1O14980 1071 aaKnown RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 PJA2O43164 708 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 AP1G2O75843 785 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CALB1P05937 261 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 OR4Q2P0C623 313 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 MYBL1P10243 752 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 OR1D2P34982 312 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 MAGEA11P43364 429 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 PLA2G4AP47712 749 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 NDUFV1P49821 464 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ROR1Q01973 937 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 PDE4CQ08493 712 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 PDCLQ13371 301 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 SMC1AQ14683 1233 aaKnown RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 PPP2R2DQ66LE6 453 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 TPGS2Q68CL5 300 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 VSTM1Q6UX27 236 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 RSPO2Q6UXX9 243 aaPredicted RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 CHRDL2Q6WN34 429 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ZSCAN30Q86W11 494 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ERICH1Q86X53 443 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 IPO4Q8TEX9 1081 aaKnown RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 SLC35F5Q8WV83 523 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CPA5Q8WXQ8 436 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CTNNBL1Q8WYA6 563 aaPredicted RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 HSFY1Q96LI6 401 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 TSGA10Q9BZW7 698 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 SLC28A3Q9HAS3 691 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CSNK1G1Q9HCP0 422 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ALG13Q9NP73 1137 aaKnown RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 PNPLA8Q9NP80 782 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ENTPD7Q9NQZ7 604 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 TAS2R14Q9NYV8 317 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ADAM22Q9P0K1 906 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 HSFX1Q9UBD0 423 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 STRIP2Q9ULQ0 834 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 PTPRDP23468 1912 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 MTMR11A4FU01 709 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CLDN5O00501 218 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 LPXNO60711 386 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CXCL14O95715 111 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 TMEM253P0C7T8 217 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 MMP8P22894 467 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 DNAJB2P25686 324 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ACADSBP45954 432 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 RPL34P49207 117 aaKnown RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 GALCP54803 685 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 ARPP19P56211 112 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 KIF5AQ12840 1032 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 GPM6BQ13491 265 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 RAB33AQ14088 237 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CCDC142Q17RM4 750 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 LIN9Q5TKA1 542 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CLEC20AQ6ZU45 233 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 MON1BQ7L1V2 547 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 MCOLN2Q8IZK6 566 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 CCAR2Q8N163 923 aaKnown RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 ZNF461Q8TAF7 563 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 KCTD13Q8WZ19 329 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 PPP1R13BQ96KQ4 1090 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 TCF25Q9BQ70 676 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 EMILIN2Q9BXX0 1053 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 SLC4A5Q9BY07 1137 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 LMAN2LQ9H0V9 348 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 DMAP1Q9NPF5 467 aaPredicted RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 WDR35Q9P2L0 1181 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 AFF4Q9UHB7 1163 aaKnown RBP11.35□□□□□ -0.59
SS18-213ENST00000579640 MTUS1Q9ULD2 1270 aa11.35□□□□□ -0.59
SS18-213ENST00000579640 TNRC18O15417 2968 aaPredicted RBP11.34□□□□□ -0.59
SS18-213ENST00000579640 WDR27A2RRH5 827 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 BTNL10A8MVZ5 291 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 FSCN2O14926 492 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 TRIM66O15016 1216 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 KRT86O43790 486 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 ABLIM3O94929 683 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 C1RP00736 705 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 BDNFP23560 247 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 GABRB2P47870 512 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 GSCP56915 257 aaPredicted RBP11.34□□□□□ -0.59
SS18-213ENST00000579640 GPC5P78333 572 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 PTPN20Q4JDL3 420 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 TMEM110Q86TL2 294 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 TIFAQ96CG3 184 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 C18orf8Q96DM3 657 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms