RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SLC46A2Q9BY10 475 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 FOXQ1Q9C009 403 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 ZMYM5Q9UJ78 669 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 PIEZO1Q92508 2521 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 COL4A3Q01955 1670 aa25.45■■□□□ 1.67
SHMT1-206ENST00000579558 ZNF263O14978 683 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 SLC16A3O15427 465 aaKnown RBP25.45■■□□□ 1.66
SHMT1-206ENST00000579558 PRAMEF12O95522 483 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 CCNE1P24864 410 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 DDX6P26196 483 aaKnown RBP eCLIP25.45■■□□□ 1.66
SHMT1-206ENST00000579558 WEE1P30291 646 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 PPP1R2P41236 205 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 NOP14P78316 857 aaKnown RBP25.45■■□□□ 1.66
SHMT1-206ENST00000579558 NHLH1Q02575 133 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 KRT39Q6A163 491 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 TPRG1Q6ZUI0 275 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 ZC3H3Q8IXZ2 948 aaKnown RBP25.45■■□□□ 1.66
SHMT1-206ENST00000579558 MAB21L3Q8N8X9 362 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 DHTKD1Q96HY7 919 aaPredicted RBP25.45■■□□□ 1.66
SHMT1-206ENST00000579558 CEP295NLQ96MC4 621 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 B3GNT5Q9BYG0 378 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 ZNF518BQ9C0D4 1074 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 ELOVL4Q9GZR5 314 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 HEBP1Q9NRV9 189 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 OBP2AQ9NY56 170 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 SIT1Q9Y3P8 196 aa25.45■■□□□ 1.66
SHMT1-206ENST00000579558 GREB1Q4ZG55 1949 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 KANSL1LA0AUZ9 987 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 F8VP50 259 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 CLDN5O00501 218 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 STX10O60499 249 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 TADA3O75528 432 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 CD44P16070 742 aaKnown RBP25.44■■□□□ 1.66
SHMT1-206ENST00000579558 ASPAP45381 313 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 MCCD1P59942 119 aaPredicted RBP25.44■■□□□ 1.66
SHMT1-206ENST00000579558 TXNDC8Q6A555 127 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 CMTM8Q8IZV2 173 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 CCDC150Q8NCX0 1101 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 PJA1Q8NG27 643 aa25.44■■□□□ 1.66
SHMT1-206ENST00000579558 DDX23Q9BUQ8 820 aaKnown RBP25.44■■□□□ 1.66
SHMT1-206ENST00000579558 SMG9Q9H0W8 520 aaKnown RBP25.44■■□□□ 1.66
SHMT1-206ENST00000579558 ATP8B3O60423 1300 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 BIN1O00499 593 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 AVPR1AP37288 418 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 MXI1P50539 228 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 NDST1P52848 882 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 DCAF17Q5H9S7 520 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-206ENST00000579558 TCERG1LQ5VWI1 586 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 KLHL10Q6JEL2 608 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 DENND5BQ6ZUT9 1274 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 CCDC105Q8IYK2 499 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 C8orf48Q96LL4 319 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 MED10Q9BTT4 135 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 BCO2Q9BYV7 579 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 APOBEC3GQ9HC16 384 aaKnown RBP25.43■■□□□ 1.66
SHMT1-206ENST00000579558 TRPV5Q9NQA5 729 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 TICRRQ7Z2Z1 1910 aa25.43■■□□□ 1.66
SHMT1-206ENST00000579558 SOBPA7XYQ1 873 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 DCNP07585 359 aaKnown RBP25.42■■□□□ 1.66
SHMT1-206ENST00000579558 BMP6P22004 513 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 CACNA2D1P54289 1103 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 FCHO2Q0JRZ9 810 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 MORC3Q14149 939 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 UBXN2BQ14CS0 331 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 ACOT1Q86TX2 421 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 MON1AQ86VX9 555 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 UNC93AQ86WB7 457 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 DTWD2Q8NBA8 298 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 BPIFB1Q8TDL5 484 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 LRRC3BQ96PB8 259 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 NIF3L1Q9GZT8 377 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 EHD2Q9NZN4 543 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 HMGXB4Q9UGU5 601 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 COL4A2P08572 1712 aa25.42■■□□□ 1.66
SHMT1-206ENST00000579558 ZNF638Q14966 1978 aaKnown RBP25.42■■□□□ 1.66
SHMT1-206ENST00000579558 CHADO15335 359 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 CD72P21854 359 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 ORC1Q13415 861 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 FAM35AQ86V20 835 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 CELF5Q8N6W0 485 aaKnown RBP25.41■■□□□ 1.66
SHMT1-206ENST00000579558 FBXL13Q8NEE6 735 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 CYP3A43Q9HB55 503 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 TRPC7Q9HCX4 862 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 LTB4R2Q9NPC1 389 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 TMEM30AQ9NV96 361 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 MIA3Q5JRA6 1907 aa25.41■■□□□ 1.66
SHMT1-206ENST00000579558 H0Y858 1186 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 LRRN2O75325 713 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 USP46P62068 366 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 ARHGAP29Q52LW3 1261 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 ZNF852Q6ZMS4 543 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 CSGALNACT1Q8TDX6 532 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 NELFBQ8WX92 580 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 SEMA4DQ92854 862 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 IRF2BPLQ9H1B7 796 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 ARMCX3Q9UH62 379 aaPredicted RBP25.4■■□□□ 1.66
SHMT1-206ENST00000579558 CTNND2Q9UQB3 1225 aa25.4■■□□□ 1.66
SHMT1-206ENST00000579558 FAM170BA6NMN3 283 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 PPP1R3GB7ZBB8 358 aa25.39■■□□□ 1.66
SHMT1-206ENST00000579558 ARNTLO00327 626 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms